Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41380 330 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G22530 189 / 3e-59 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G61210 187 / 8e-59 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G10830 181 / 3e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G54150 179 / 6e-55 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G55450 171 / 1e-51 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024476 [exp] 201 / 4e-64 AT5G10830 370 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002994 [exp] 196 / 7e-62 AT5G10830 365 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042200 [exp] 392 / 3e-139 AT2G41380 342 / 1e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G039051 [exp] 317 / 8e-110 AT2G41380 272 / 2e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103200 [exp] 200 / 8e-64 AT5G10830 376 / 5e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103400 [exp] 196 / 5e-62 AT4G22530 317 / 1e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G101800 [exp] 195 / 9e-62 AT4G22530 331 / 3e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G066200 [exp] 186 / 3e-58 AT5G10830 339 / 2e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G067500 [exp] 181 / 4e-56 AT5G10830 326 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10001155 pacid=23155731 polypeptide=Lus10001155 locus=Lus10001155.g ID=Lus10001155.BGIv1.0 annot-version=v1.0 ATGTCGAAATTGTTCATGAAGCAAGCAAAGGAGTACGCCAAAACCAGGCCTACTTACCCGCAATACCTCTTCCACTTCATAGCTTCCACAACTCCTTCCC ACCAACTTGTCTGGGACGTCGGCACTGGAAGCGGCCAGGCTGCTCAATCGTTAGCAGGGATCTACAAGAAGGTAATCGCCACGGACACGAGTGAAACCCA ACTCCAATACGCCCCCAAACTCCCAAACGTGGAATACCGCCACACTCCACCGGTTATCCAAATCTCCGACCTGCCGCGCTTCGTTGCCGAGGAATCGACG GTCGATCTCGTCACTGTCGCTCAGGCACTCCACTGGTTAGATCTGCCGGAGTTCTACCGGCAAGTGAAATGGGTTCTGAAGAAACCCGACGGGGTGATCG CGGCGTGGTGCTACGGCACCCCTGAAGTGAATTCGGGAGTGGATTCGGTGTTCAACCATTTCTACACAGTGGAATCGGGTCCTTACTGGGACCCACAGCG GAAACTGGTGGACGATGGGTATAACGGAGTGGATTTCCCGTTTGAGGAGGCAGTTGAAGGAGAAGGAGGGACGGGGCCCTTCAGGTTTGTTACGGAGAAG CTAATGGATTTGGATGGCTTCTTCACGTATTTGAGGTCTTGGTCTGCTTATCAGACTGCTAAGGAGAAAGGTGTTGAGTTATTGGGAGATGATGTGATTC ACAAGTTTAGGCGAGTTTGGAATGAGGATGGAGTCCATGAGAAACTTGTCCGATTTCCTGTTTATCTTAGGATCGGCAAAGTTGCACTTGTAAAAAATTG A
AA sequence Show only first row Show all	>Lus10001155 pacid=23155731 polypeptide=Lus10001155 locus=Lus10001155.g ID=Lus10001155.BGIv1.0 annot-version=v1.0 MSKLFMKQAKEYAKTRPTYPQYLFHFIASTTPSHQLVWDVGTGSGQAAQSLAGIYKKVIATDTSETQLQYAPKLPNVEYRHTPPVIQISDLPRFVAEEST VDLVTVAQALHWLDLPEFYRQVKWVLKKPDGVIAAWCYGTPEVNSGVDSVFNHFYTVESGPYWDPQRKLVDDGYNGVDFPFEEAVEGEGGTGPFRFVTEK LMDLDGFFTYLRSWSAYQTAKEKGVELLGDDVIHKFRRVWNEDGVHEKLVRFPVYLRIGKVALVKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	0	1
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	1.0	0.9804
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	2.0	0.9801
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	2.8	0.9757
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	3.5	0.9767
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	4.5	0.9751
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	4.9	0.9731
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	5.1	0.9638
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014083 [exp]	6.0	0.9676
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	7.1	0.9663
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	7.5	0.9684

Compare expression of checked genes

Lus10001155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.