Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47300 689 / 0 ribonuclease Ps (.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G194100 [exp] 864 / 0 AT2G47300 734 / 0.0 ribonuclease Ps (.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06978 [flax] [poplar] POP1 Ribonucleases P/MRP protein subunit POP1 PF08170 [flax] [poplar] POPLD POPLD (NUC188) domain
Representative CDS sequence Show only first row Show all	>Lus10001156 pacid=23155727 polypeptide=Lus10001156 locus=Lus10001156.g ID=Lus10001156.BGIv1.0 annot-version=v1.0 ATGACGGCCGACGGAATCAGAAAGTCTCAGGGTGAAATACTTCCTCCTCGGAAGCTCAATGTCCAGAAATTTTCGGAATCTCGAGCTTCGGAGCTTGATG CTCTTCACTCCATAGTATCTAATCGACTGAAGGAGAATTTCCGCTCGAGGAGGAATAAGAGGAGGAGGACGACCTCCTACGACAACCAAGCTGCCAAGTG GAGATACAGAAAAAGGCACAAGCCCGAAGCTTCTGGAAGTAACGGGGCACAGGATGAGAGCCAGAGACGCGTTCCTCGCCGAGTTCGCCGCAGAGAGGAA CTTAAGAAGAATCCCGAGCAAGGTTTCTCTACCTCCGGTGACGGGACCAAGAGGCTTAGGACCCATGTATGGCATGCGAAGAGGTTCACTATGACAAAGC TATGGGGATTCCACCTTCCCCTAGGCTTGCATGGAAGTGGAAAGGGTTCTAGAGCAGCATTGAGATGGTTGAAGAGTGGAGCTGTTGTTCATGATGCAAG TTATCATACAGCTGTTCAACTGGACGGTCCAGAGGATTCTTTGATGTCGGTTCTGAGGATGGTGCTACTTCCCTCTTTGTCCTCTGAAAACGAGGATGCT ACCAGTTCTATTATGTCGGGAGTTACTTATGGAACTGCAGTGCTTCATCATGTAGGAGCACCTACTTCTCAAGCAATTGCCCCAGTGACTTACTTGTGGC GTCCCTCTCATTATGTTAACGCTGAGACAGGTGCCACCGAACGTAATTCTAGTGAATGCAGTGTGCCACAGCGTTCAGAACTTCATCGTTCTTCTCGTCA GCTATGGATGTGGATACATGCTTCAGCTTTTTCTGAGGGATATAATGCCCTAAAGTATGCATGTCAAAAGCAGATGAATGAGGAAAATGTGTCAATTAAT TGTTGTTCACTTGAAGGTCAACTAGCTAAAATAGAAGTAATGGGAGCGAAAGCATCTCAGCTTCTTCAGAGCACGTTGCATCCTGTTTTTAGGCCAAGTT CAGAAAACTCTTGCCTCTTGAAGAGATGTTCTGTTGTTAAGGATGATCAGGATACTGAACTCTTGAAGCTGTCGACTCTTGATCATGACATTTTCCATGA TCGTCAAGTTTTTTCTCTTGTTGTTAAGGACCCTCGTACCCTGCATGACAACATGACTGGAGATCCTTCAGAGACATCTCCTTGCAATGTCGTGGATATT GATGCTAACAAAAGTTCTGCTTTAGATGGATCTTTGGGGAAGACTGAACAGCTACATGTATCGCTGGAATCAAAACCTGAAGGAGCTTCCCTCACTAACC TCTGGGATATTAGATCTGGGGTTAGCATGCCCATTGATGATCAAGTCCTATGCTTGGAAAAACATCAAACACGAAGGGATTTCATTTGTGTCAGTGGTCC AAAGTTGGGTATTCTGAAAGCTTGCACTAAGATGCTGGGTTCAAGATCATGTCCTATTCTACTTCTTAAGAACCATGACAAAATGGGCCAACCATTGGGA TGGTCAATGATTGTCCCACTTAGCTGGGCACGGATCTTTTGGAATCGATTTATATCAAATGAAGCTCTTGCAGTTGGTTTGAGGGAGAAGCAGTGGATAG CATGTGAAGTAGGGTTGCCTCATTTTCCATCAGATTTTCCCGACTGCAATGCGTACTGGTCTTTGAAGATAGACGAGGCTGCTAGTGAAGTTAAGAAAGC AGAACAAAAACCCTTAGCAGTAAGATCTTTTGAAGTTCCCATTCCACCACCATGGAATACTGTGCGTTCTACTCTTGTAAAAGAATTTAGAATAGGACAC GAGATGAAGCACAACGTTGAAAAAGATGAAGCAAGTAGCAATGTTTCTTCCAACTCCGAGATGGAGGAGAATGGTGAAGCATTGGTTGGAGGATATGCCA ATAAATTTAATGGATTTGTAGCAAGAAGTTCAAGATTGGCGATCAACAACTTGAAGCAGATCAGCGGTGATAATTTATTTTTATTTACCCGAGTTACCAA CTCAGATTCAAGGCTTTTGGCACTGATGAAGGATGAAAACAATCCTAGCAATGTTAAGGGTGATGTGAAGTATGATGGTAAAGTATGTTTCCTTAGAGTT ATTCTCCATGCATTTAAGGAAGGTGTAATTGAAGAAGGTTCAGTGGTAAGTGCCCCTCGTGCTGGTGACATTGCTCGGTGGACTAAAAGTGGCAGGCTAG ACAGTGATGACAGCAGACCAGAAATCCCAGACTCTGCCGTGAGATCATACTTCAAAAAGGAATCTGCAGGGAAATGGGAACTTGAAATACCGCAGGATGG TGCTGCTATGGAATCTCATCGATGGCCTATTGGTTTTGTGACGACTGGCTTCGTTCGGGGAAGCAAAAAGGCGGCAGCAGAAGCATTTTGCGAGGCAATT CTGTTAGCCCGTATTAGGGAAGAGCAGTGGAAAGAAACTCCGGTTAAAGAGAGAAGGAAAGAAATATATGTGCTGGTTAGAAATCTGAGATCGTCGGCAT ACAGACTAGCTCTTGCAACGATAGTCCTGGAACAACAAGAATCGGATGTTGACTTCTTGTGA
AA sequence Show only first row Show all	>Lus10001156 pacid=23155727 polypeptide=Lus10001156 locus=Lus10001156.g ID=Lus10001156.BGIv1.0 annot-version=v1.0 MTADGIRKSQGEILPPRKLNVQKFSESRASELDALHSIVSNRLKENFRSRRNKRRRTTSYDNQAAKWRYRKRHKPEASGSNGAQDESQRRVPRRVRRREE LKKNPEQGFSTSGDGTKRLRTHVWHAKRFTMTKLWGFHLPLGLHGSGKGSRAALRWLKSGAVVHDASYHTAVQLDGPEDSLMSVLRMVLLPSLSSENEDA TSSIMSGVTYGTAVLHHVGAPTSQAIAPVTYLWRPSHYVNAETGATERNSSECSVPQRSELHRSSRQLWMWIHASAFSEGYNALKYACQKQMNEENVSIN CCSLEGQLAKIEVMGAKASQLLQSTLHPVFRPSSENSCLLKRCSVVKDDQDTELLKLSTLDHDIFHDRQVFSLVVKDPRTLHDNMTGDPSETSPCNVVDI DANKSSALDGSLGKTEQLHVSLESKPEGASLTNLWDIRSGVSMPIDDQVLCLEKHQTRRDFICVSGPKLGILKACTKMLGSRSCPILLLKNHDKMGQPLG WSMIVPLSWARIFWNRFISNEALAVGLREKQWIACEVGLPHFPSDFPDCNAYWSLKIDEAASEVKKAEQKPLAVRSFEVPIPPPWNTVRSTLVKEFRIGH EMKHNVEKDEASSNVSSNSEMEENGEALVGGYANKFNGFVARSSRLAINNLKQISGDNLFLFTRVTNSDSRLLALMKDENNPSNVKGDVKYDGKVCFLRV ILHAFKEGVIEEGSVVSAPRAGDIARWTKSGRLDSDDSRPEIPDSAVRSYFKKESAGKWELEIPQDGAAMESHRWPIGFVTTGFVRGSKKAAAEAFCEAI LLARIREEQWKETPVKERRKEIYVLVRNLRSSAYRLALATIVLEQQESDVDFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	0	1
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	1.7	0.8846
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	3.2	0.8920
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10005192 [exp]	3.9	0.8653
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	4.9	0.8776
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	7.7	0.8399
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	7.9	0.8885
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	8.4	0.8581
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10037411 [exp]	11.5	0.8530
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	11.6	0.8470
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	13.7	0.8560

Compare expression of checked genes

Lus10001156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.