Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34570 251 / 8e-83 MEE21 maternal effect embryo arrest 21, PIN domain-like family protein (.1) AT2G46230 49 / 9e-07 PIN domain-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197200 [exp] 316 / 2e-108 AT2G34570 297 / 3e-101 maternal effect embryo arrest 21, PIN domain-like family protein (.1) Potri.009G159400 [exp] 218 / 4e-71 AT2G34570 210 / 2e-68 maternal effect embryo arrest 21, PIN domain-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF04900 [flax] [poplar] Fcf1 Fcf1
Representative CDS sequence Show only first row Show all	>Lus10001157 pacid=23155726 polypeptide=Lus10001157 locus=Lus10001157.g ID=Lus10001157.BGIv1.0 annot-version=v1.0 ATGAAGGTGAAGAAGCAGAAGCGTCATCGTCGAGCTGTTCGTTTCTTCACGGCCTGTTTCGGTTTCCATCAGCCCTACAAGGTTTTCTGCGACGGCACAT TCGTACACCACCTCATCGCCAATCGCATAGTACCTGCGGACATTGCTCTATCCAACATCCTTGGCGGTCCCGTCAAGCTCTTCACTTCCAGATGCGTTGT CGAGGAGCTCAAAAGGCTTGGCCCTTCTTATTCTCAAGATATAGAAGCTGCTCACAAGCTTATGACTGCGAGGTTGTTCATCGGTTTGGATTTCTTGGAG CTGTTTCTGTTTCAATACATGTTGGCTATTTTAACTTTTAGAAACAAGGATTTTAAGAGGAGTTCCAATTTTCGTCATGACAGATGTGATCACGAGGGTA TCAAGAGTGCAGAAGCTTGCCTTACCGACATAGTTGGGGAAAATAACCCTGAACATTTTTTTATCGCAACTCAGGATGCTGATTTACGAAACAAGTTCCA AGAGGTACCAGGTGTCCCTCTCATTTTTGGTCTCAGAAATTCTCTCTTCCTTGAGAAACCGTCATCATTTCAGCATGAGTTTGTGATAGCTTCTGAAGTG CACCGCTCTATTCTGTCTGAGAGAGAACGCGACATATTAAAGAAGCAGACCAGCAACATCCTAGAAACTGCAGAAAGAGGCACTTCTGCTGATGAGCATG AACGTCCAGGAGATGATCATTTTGGATCGAACTGTTACGTGCGAAACGGGATAAATGTTAAAGACAGACCTCAGTTCAAGAGAAAGAAGGCCAAGGGTCC GAATCCATTGTCCTGTCGGAAGAAGAATGGCGCCAAGACCAAGGCTTCTGTAGCTGAGAAGCTATGTTTAATTGCTTTGCATGTAGAAGCACCGGAAAGT AAAGCATAA
AA sequence Show only first row Show all	>Lus10001157 pacid=23155726 polypeptide=Lus10001157 locus=Lus10001157.g ID=Lus10001157.BGIv1.0 annot-version=v1.0 MKVKKQKRHRRAVRFFTACFGFHQPYKVFCDGTFVHHLIANRIVPADIALSNILGGPVKLFTSRCVVEELKRLGPSYSQDIEAAHKLMTARLFIGLDFLE LFLFQYMLAILTFRNKDFKRSSNFRHDRCDHEGIKSAEACLTDIVGENNPEHFFIATQDADLRNKFQEVPGVPLIFGLRNSLFLEKPSSFQHEFVIASEV HRSILSERERDILKKQTSNILETAERGTSADEHERPGDDHFGSNCYVRNGINVKDRPQFKRKKAKGPNPLSCRKKNGAKTKASVAEKLCLIALHVEAPES KA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	0	1
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	2.4	0.9466
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	5.2	0.9143
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	5.2	0.9356
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	5.6	0.9075
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	5.7	0.9299
AT2G19385			zinc ion binding (.1)		Lus10011942 [exp]	6.0	0.9051
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	6.8	0.9368
AT4G15820			unknown protein		Lus10043415 [exp]	6.9	0.9014
AT1G60640			unknown protein		Lus10033578 [exp]	11.7	0.8934
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	12.0	0.9228

Compare expression of checked genes

Lus10001157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.