Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43110 244 / 8e-81 unknown protein AT3G06980 42 / 0.0003 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150100 [exp] 289 / 2e-98 AT2G43110 309 / 5e-106 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10001158 pacid=23155734 polypeptide=Lus10001158 locus=Lus10001158.g ID=Lus10001158.BGIv1.0 annot-version=v1.0 ATGGGAAGCGCTAAAGCTGGCAAACCCTCAAAGAAGTCTCTCAAAAACCCTAATCCGCTTCGCATTACCCATAGGAAGATTAAGAAGAACAAACGGCAAG ACATTGCTGTTGATACAGTTCCCACCGCCGCTGAAATAGAAACACAACCTCATATCGGAGAAGAGGAGCCCCTTCCTTCCGCTTCCCAGCAACTCAGCTT TTTCCTCAGCAAGTTCCAGTCAGCTAATGGTCTTCAAGAAACATCCTTTATTCAGTTATTTCGAGAGCTGCCTCAGGATGTTGAGGGCCTAGGGCAGCAT TTGAAGGCTGCTTTCGGAAAGTCATGGAAAGAAGAACTCTGTGATCGAAATGGGAAAACTGAACCAGGGAGTCCTGCTGTTCTTTTCATTTCTACATCTG CCTTGAGAGCAATAGAACTTTTAAGGGGCGTGCGTTCACTGACGAAAGAATGCCATGCTGCAAAGCTCTTCTCTAAGCACATGAAGGTTGAAGAACAGGT CACTTTCTTAAAGAATCGTGTCAATATTGCTAGCGGCACACCAAACAGGTTGAAGAAGTTGATGGATATAAAAGCAATGGGGCTGTCGAGGTTAAAAGTT ATCGTGCTAGATGTTCACCATGATGTGAAGGGTTATTCCTTGCTCACACTTCCACAAGTGAGAGATGAGTTCTGGGATTTGTACATGAGCCACATCCACC AGCGACTGCTTCAAAGTGAGATACGCTTATGCCTCTTTGGTCCACTACGAGGAGGAAAAAGCAAAAAGAAAGCAGAGTTCTTGACGAACAAGTGA
AA sequence Show only first row Show all	>Lus10001158 pacid=23155734 polypeptide=Lus10001158 locus=Lus10001158.g ID=Lus10001158.BGIv1.0 annot-version=v1.0 MGSAKAGKPSKKSLKNPNPLRITHRKIKKNKRQDIAVDTVPTAAEIETQPHIGEEEPLPSASQQLSFFLSKFQSANGLQETSFIQLFRELPQDVEGLGQH LKAAFGKSWKEELCDRNGKTEPGSPAVLFISTSALRAIELLRGVRSLTKECHAAKLFSKHMKVEEQVTFLKNRVNIASGTPNRLKKLMDIKAMGLSRLKV IVLDVHHDVKGYSLLTLPQVRDEFWDLYMSHIHQRLLQSEIRLCLFGPLRGGKSKKKAEFLTNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43110			unknown protein		Lus10001158 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	6.7	0.9382
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	9.2	0.9342
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	13.0	0.9341
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	16.5	0.9320
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	19.1	0.8889
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	22.6	0.9309
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	24.2	0.9243
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	24.5	0.9260
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	30.3	0.9190
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	31.1	0.9211

Compare expression of checked genes

Lus10001158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.