Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43120 436 / 1e-154 RmlC-like cupins superfamily protein (.1) AT3G59220 385 / 2e-135 ATPIRIN1, PRN1, PRN pirin (.1) AT1G50590 365 / 6e-127 RmlC-like cupins superfamily protein (.1) AT3G59260 336 / 5e-116 pirin, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019561 [exp] 653 / 0 AT2G43120 436 / 9e-155 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150200 [exp] 508 / 0 AT2G43120 461 / 9e-165 RmlC-like cupins superfamily protein (.1) Potri.002G231900 [exp] 500 / 6e-180 AT2G43120 452 / 6e-161 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02678 [flax] [poplar] Pirin Pirin CL0029 [flax] [poplar] Cupin PF05726 [flax] [poplar] Pirin_C Pirin C-terminal cupin domain
Representative CDS sequence Show only first row Show all	>Lus10001159 pacid=23155732 polypeptide=Lus10001159 locus=Lus10001159.g ID=Lus10001159.BGIv1.0 annot-version=v1.0 ATGAAAGCTGTGTTCCAGAGACTGATATCGTCAAGCACCCAGATTGGTGATAGGAAGAAAGTTGTATCGTTTCCATTAATCAGAAGCGCCAATATGTCTG AATCCTCTGCCTTTGATTCTCCGAGATTGGTGACCAAGAAGGTCCTTGCTAAGCTTCAGCATGAAGGGGATGGTGCTTCTGTCAGGAGAAGCATTGGAAG GAGTGAGCTCCGGTCTCTGGACCCTTTCCTCATGTTGGATGAGTTTTCAGTCTCAGCGCCTGCTGGATTTCCTGATCATCCCCACAGAGGATTTGAGACT GTTACATACATGCTGGAGGGTTCATTCATTCATCAAGATTTTTCTGGGCATAGAGGGACTATTCATGCGGGGGATGTTCAATGGATGACAGCAGGGAGAG GGATAGTCCATTCAGAAATGCCAGCAGGAGAAGGAGTCCAGAGAGGCCTTCAGCTTTGGATAAACCTCTCTTCTCAACAGAAAATGATTGAGCCAAGGTA TCAGGAACTTCTGCGGCAGGACATCAAAAGAGCAGAGAAAGACGGGGTTGAAGTCCGAATCATAGCAGGGGAATCAATGGAAATCGAGTCTCCAGTTTAT ACAAGGACCCCAACAATGTACCTTGATTTCACACTGCAACCAAGGTCCCAAATGCACCAGCCCATTCCAGAATTATGGAACGCATTCATTTACGTCATTG AAGGTGAAGGAGTGTTTGGGATCCCAAACTCCTCACCAGTTGAAGCACATCATACACTGGTTCTAGGCCCTGGTGAAGGAATGAGTGCCTGGAACAAATC CTCTTCCAAACCCTTGAGGTTTGTCTTGATTGCAGGCCAGCCACTTAACCAACCAGTGGTGCAGCATGGTCCTTTTGTCATGAACACAGAATCTGAAATC CACCAAGCAATTGAAGATTACCACTACTCCAAAAATGGGTTTGAAATGGCGCAGTATTGGAGTTCCCAATAG
AA sequence Show only first row Show all	>Lus10001159 pacid=23155732 polypeptide=Lus10001159 locus=Lus10001159.g ID=Lus10001159.BGIv1.0 annot-version=v1.0 MKAVFQRLISSSTQIGDRKKVVSFPLIRSANMSESSAFDSPRLVTKKVLAKLQHEGDGASVRRSIGRSELRSLDPFLMLDEFSVSAPAGFPDHPHRGFET VTYMLEGSFIHQDFSGHRGTIHAGDVQWMTAGRGIVHSEMPAGEGVQRGLQLWINLSSQQKMIEPRYQELLRQDIKRAEKDGVEVRIIAGESMEIESPVY TRTPTMYLDFTLQPRSQMHQPIPELWNAFIYVIEGEGVFGIPNSSPVEAHHTLVLGPGEGMSAWNKSSSKPLRFVLIAGQPLNQPVVQHGPFVMNTESEI HQAIEDYHYSKNGFEMAQYWSSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43120			RmlC-like cupins superfamily p...		Lus10001159 [exp]	0	1
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	4.9	0.8656
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10034640 [exp]	6.2	0.8838
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	11.7	0.8786
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	17.3	0.8543
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	17.9	0.8669
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	20.1	0.8527
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	26.7	0.8245
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	29.9	0.8303
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	31.7	0.8633
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	35.7	0.8418

Compare expression of checked genes

Lus10001159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.