Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17010 165 / 4e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006582 [exp] 247 / 1e-85 AT4G17010 166 / 3e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038600 [exp] 195 / 8e-65 AT4G17010 140 / 4e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001160 pacid=23155729 polypeptide=Lus10001160 locus=Lus10001160.g ID=Lus10001160.BGIv1.0 annot-version=v1.0 ATGAACAAGTTACTGGACTTTGGGAGGAAGGCGTTTTTCTACGTGAGGGTTCTTTCAGGGTATGAAGAACGCCGAATCAGGAATTATAGGTTGGAGCTGG AGAAGCGTCTTCAACAGGCACAGGAGAAAAAGTTGGCCTTGAGAAAGATCCCTGAGCAGACTATACTTTCTGAAGTTCGCTCTATGGTTGAGGAAATGCA AGCTCTGAACAAGAAGCTGGAAGAAACTGAGGCTCAAATTGATGACTACTTCAAGCCAATTAACATGCAAGCTGAGATCCTAATGAAACAACAGCTTGAG GGGGAGGAGAGGACGATGACAGAGATGATGAAGGTTATGCAAACTAAAGCTTTGATTGAGGAAGCCCAAGCTGCTAAAGTACATCATCATCAACAGACCG ACAAGCAGGAAATACAATCTCCCCCAACCAAGCAGGAGGCCCAAGTAAGATAA
AA sequence Show only first row Show all	>Lus10001160 pacid=23155729 polypeptide=Lus10001160 locus=Lus10001160.g ID=Lus10001160.BGIv1.0 annot-version=v1.0 MNKLLDFGRKAFFYVRVLSGYEERRIRNYRLELEKRLQQAQEKKLALRKIPEQTILSEVRSMVEEMQALNKKLEETEAQIDDYFKPINMQAEILMKQQLE GEERTMTEMMKVMQTKALIEEAQAAKVHHHQQTDKQEIQSPPTKQEAQVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17010			unknown protein		Lus10001160 [exp]	0	1
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	1.0	0.9296
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10019126 [exp]	2.0	0.9039
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	2.0	0.9275
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	2.4	0.9071
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	5.7	0.8858
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	6.3	0.8960
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	7.1	0.8728
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	8.8	0.8863
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	9.5	0.8718
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	9.9	0.8771

Compare expression of checked genes

Lus10001160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.