Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05960 929 / 0 ARM repeat superfamily protein (.1.2) AT2G41830 691 / 0 Uncharacterized protein (.1) AT5G21080 528 / 1e-171 Uncharacterized protein (.1) AT5G26850 482 / 2e-154 Uncharacterized protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006583 [exp] 1755 / 0 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10026298 [exp] 708 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10019717 [exp] 618 / 0 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10042372 [exp] 561 / 0 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10029842 [exp] 508 / 5e-164 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10020697 [exp] 493 / 3e-158 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10016400 [exp] 273 / 4e-77 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128000 [exp] 1254 / 0 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2) Potri.006G052100 [exp] 743 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.016G055100 [exp] 559 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.013G008500 [exp] 537 / 2e-175 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001161 pacid=23155723 polypeptide=Lus10001161 locus=Lus10001161.g ID=Lus10001161.BGIv1.0 annot-version=v1.0 ATGGGGGTTATGTCAAGGCGGATTTTACCGGCCTGCGGTAATCTCTGTTGCTTATGTCCTTCATTGAGAGCAAGTTCAAGACAGCCAGTTAAGCGATACA AGAAACTGCTCGCTGACATATTCCCTAAGAAGCAGGAAGCTGAACCGAATGATAGGAAAATTGGGAAGCTGTGCGAGTATGCTGCAAAAAATCCATTACG GATTCCTAAGATTTCCGAAACCCTGGAACAAAGATTTTATAAAGAGCTGCGTCATGCACACTTTGGATCTGTGAAAGTAGTGGTGTGCATCTACAGGAAA TTATTATTTTCCTGCAAGGACCAAATGCCATTATTTGCTAGTAGTTTGTTGGAAATCTTGCAGACTCTCCTGGAGCAAACTCAGCGGCTAGATTTGCAGA TTTTGGCTTGCAATTCTTTTGGTGATTTTATTAGCAGCCAGATAGATGGGACACACATGTTCAACTTAGAGGGTGTCATTCCCAAGCTCTGTAGATTGTC TCAAGTTGAGGGAGACGAAGAAAATGCTTTGTGCTTGCGTTCAGCAGGGCTTCAAGCTCTTGCTTCCATGGTGTCTTTCATGGGCGAGCACTCTCATATA TCAATGGATTTTGACAATATTATATCAGTCACATTGGAGAACTACATCGATTTCGAAATGAATGCAGAAAATTGTGAGGAGCGGTGGACTCAGGAAGTAC GAAAATCAGGAGATAATGGTTCATCTTTCCCAGATATCAGTAAAAATGTTTCGTTCTCAAACTTGAATACCAAGTCCCAACTGCCCCCCTCTGGTGATAC TTCAAAGGACCCGTCTTATTGGTCTAGAGCTTGCTTATGTAATATGGCCAGATTGGCCAAAGAAGCGTCAACAGTACGACGTATACTAGAACCACTTTTT CATAACTTTGATTTCAATAACCGTTGGTCTCTTCAAAGCGGAGTTGCATGCTCCGTTTTGATGCATTTGCAGTCCCTTTTAGAGGAAACAGGTGACAACT CACATCTTTTATTGTCAAACTTGATCAAGCACTTGGATCATAAGAATGTCGCAAAGCAAGCTCTTGTGCAGATAGATATCGTTAACATTGCTGAAACAAT CGGATGTAATTCAAAGCAACAGTGCACTGTAACCCTCGTTGGTGCAATCTCTGAGCTATTGAAACACTTGAGAAAGTGTTTACAGATTCAAGCTGGATTA TCCAGCCAAAAGGATGTCCATGATAAATTAAATTTGGATCTTCAGTCTGCATTAGAAAAATGCATCTTACAGCTCTCAAACAAGGTTGGAGATGTGGGGC CGATACTTGACATGATGTCTGGATTCTTAGAGAATGTTTCAAACACTGCTGCTGTAGCTCGAACCACAGTCTCCACGATCCTTCGAACATCTCATATTTT AGCTGCTGTCCCAAACATATCATACAATAAGAAGGCTTTTCCTGATGCTCTGTTCCACCAACTACTCATTGCTATGACCCATTCAGACTACAAAGTACGA GTTGGAGCACACCGTATATTTTGCATTGTGCTCATACCCTCCTTAGTTTCTCCATTTTCAGATGATAAGAATGCATCTGCAGCCGATTCTAGAAGTTTTG GTTCATCGCAAAGGTTAAAGACTGAAAGTTTCTCCACTGGTCGTAACGGTAACGATAAAGTAGCTGTTGCTAATGGGAAGTTGTTTGAAGGAGATATTGA ACTAGTTGATGTGAATGAAAAAGCATCGAAAAATAGTAATCTGCTTTGTCATCCAAAGATCTTAAAGCAGTCTATATTTGACGGGAAAATGCTTACCACC CTCCGATTGAGCAGTCATCAAGTTAGTCTTCTGCTGTCATCAATATGGGTTCAAGCAATTAATGCTGAGAATGCACCAGCAAACTTTGAAGCTATGGCTA ATACTTATTATATTGCTTTGGTATTTAGTAGATCTAAGGCAGCCAGTCACATTGCTCTGGTTCGATGTTTTCAGCTTGCATTTTCTTTAAGAAGCATCTC TTTGGACCAAGAAGCCGGTCTGCAACCTTCTCGGAGAAGGTCTCTCTTCACCTTGTCATCTTGCATGCTATTGTTGTCAGCGAAGGCTGGGGATGTTCAA GAGCTATTTCCTTTTGTCCAAGCATCACTTAAAGCAGAAACTGCTGATCCTTATTTGGAGTTAGTTGAGGAAGTCAAGTTGCTGGGTATGGTTCAGGGTG TCTATGTGAAATCTGACGTACAGAAGATAGTGTATGGTTCAGAGGAGGATAATTCTGCTGCTCTGGTATCACTCTCATCTGTGGAAGCAAATGACCAGCC GCTGAAGGAAATTGTGATATCCCATTTCATGACCAAGTCGTCGAAATTGTCAGAGGATGAATTGGTAGAAATCAGACAACAACTTCTACAGGGATTTTCG CCTGATGATGCATATCCATTAGGTGGTCCGTTATTTATGGAGACACCAAGGCCCTGTTCTCCTCTTAAACAATTGGAGATTCATTCCCTTGAAGAGGTAA TACCTGAAGCTGCCATGACTGATGACGAAGTTCTTACTGAGGCTAATGGGAGCCAATCTGATCGTAAAACATCTCTGACTGCTAACACAGCAGACATCTT AAGTGTTCATGAACTTCTTGACTCTGTGTCGGAAACTGCCCGGCAAGTAGCAAGCTCTCAGGTCTCATACAGTACGGTACCTTACGACCAAATGATGACA CAATGCGAAGCCCTTGTATCTGGTAAACAACAGAAGATGTCGATGCTTCATAGCTTCAAACATCAACATGATACTAGGATATTTCCTGGTGAAGATGAAA GGAAAAGCAATACAGAAGTAGATACATCTTCACAAGGCAGTAGACAGTCGTATAGTAGTGAACAAAGTCATACATCCAATCAGCTTGTCGTCTCTTCTCT TGGGTGCGGCCAAAATTCATTCAGGTTACCACCTTCAAGCCCTTATGACAAGTTCCTGAAAGCAGCTGGCTGCTGA
AA sequence Show only first row Show all	>Lus10001161 pacid=23155723 polypeptide=Lus10001161 locus=Lus10001161.g ID=Lus10001161.BGIv1.0 annot-version=v1.0 MGVMSRRILPACGNLCCLCPSLRASSRQPVKRYKKLLADIFPKKQEAEPNDRKIGKLCEYAAKNPLRIPKISETLEQRFYKELRHAHFGSVKVVVCIYRK LLFSCKDQMPLFASSLLEILQTLLEQTQRLDLQILACNSFGDFISSQIDGTHMFNLEGVIPKLCRLSQVEGDEENALCLRSAGLQALASMVSFMGEHSHI SMDFDNIISVTLENYIDFEMNAENCEERWTQEVRKSGDNGSSFPDISKNVSFSNLNTKSQLPPSGDTSKDPSYWSRACLCNMARLAKEASTVRRILEPLF HNFDFNNRWSLQSGVACSVLMHLQSLLEETGDNSHLLLSNLIKHLDHKNVAKQALVQIDIVNIAETIGCNSKQQCTVTLVGAISELLKHLRKCLQIQAGL SSQKDVHDKLNLDLQSALEKCILQLSNKVGDVGPILDMMSGFLENVSNTAAVARTTVSTILRTSHILAAVPNISYNKKAFPDALFHQLLIAMTHSDYKVR VGAHRIFCIVLIPSLVSPFSDDKNASAADSRSFGSSQRLKTESFSTGRNGNDKVAVANGKLFEGDIELVDVNEKASKNSNLLCHPKILKQSIFDGKMLTT LRLSSHQVSLLLSSIWVQAINAENAPANFEAMANTYYIALVFSRSKAASHIALVRCFQLAFSLRSISLDQEAGLQPSRRRSLFTLSSCMLLLSAKAGDVQ ELFPFVQASLKAETADPYLELVEEVKLLGMVQGVYVKSDVQKIVYGSEEDNSAALVSLSSVEANDQPLKEIVISHFMTKSSKLSEDELVEIRQQLLQGFS PDDAYPLGGPLFMETPRPCSPLKQLEIHSLEEVIPEAAMTDDEVLTEANGSQSDRKTSLTANTADILSVHELLDSVSETARQVASSQVSYSTVPYDQMMT QCEALVSGKQQKMSMLHSFKHQHDTRIFPGEDERKSNTEVDTSSQGSRQSYSSEQSHTSNQLVVSSLGCGQNSFRLPPSSPYDKFLKAAGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	0	1
AT3G20720			unknown protein		Lus10011166 [exp]	1.0	0.8857
AT1G64610			Transducin/WD40 repeat-like su...		Lus10003206 [exp]	2.0	0.8673
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	2.8	0.8436
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	3.5	0.8834
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	4.6	0.8739
AT3G20720			unknown protein		Lus10043072 [exp]	5.9	0.8607
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	6.5	0.8556
					Lus10029801 [exp]	9.9	0.8406
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	12.2	0.8399
AT2G15900			Phox-associated domain;Phox-li...		Lus10012042 [exp]	12.2	0.8047

Compare expression of checked genes

Lus10001161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.