Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04850 548 / 0 Auxin-responsive family protein (.1) AT3G25290 218 / 6e-67 Auxin-responsive family protein (.1.2) AT5G47530 217 / 1e-66 Auxin-responsive family protein (.1) AT5G35735 216 / 2e-66 Auxin-responsive family protein (.1) AT4G12980 208 / 2e-63 Auxin-responsive family protein (.1) AT4G17280 201 / 3e-60 Auxin-responsive family protein (.1) AT3G59070 180 / 7e-52 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 122 / 6e-31 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G48750 115 / 2e-29 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 114 / 5e-28 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001736 [exp] 741 / 0 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10002274 [exp] 233 / 1e-72 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10012350 [exp] 230 / 9e-72 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10001734 [exp] 228 / 1e-70 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10017564 [exp] 221 / 5e-68 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 220 / 2e-67 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10000915 [exp] 203 / 1e-60 AT3G25290 205 / 2e-61 Auxin-responsive family protein (.1.2) Lus10025877 [exp] 171 / 5e-50 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 155 / 8e-45 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161700 [exp] 609 / 0 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1) Potri.002G222600 [exp] 592 / 0 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 233 / 4e-73 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 231 / 4e-72 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 230 / 8e-72 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 223 / 4e-69 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 221 / 3e-68 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 214 / 9e-66 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.010G156200 [exp] 204 / 6e-62 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.019G096400 [exp] 192 / 6e-57 AT5G47530 309 / 2e-102 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [flax] [poplar] PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10001162 pacid=23155044 polypeptide=Lus10001162 locus=Lus10001162.g ID=Lus10001162.BGIv1.0 annot-version=v1.0 ATGCCTCTCTGCCACTTCTTCCTCCTCCCCCTATTCTTTCTCACGGTGGCTGCAGCAGCCGCCTCCTCTTCCTCCGCCACATGCTCGACCACCACTGCCA AGAAAACCTTCCAAAAATGCATGACTCTTCCCACCCAACAAGCCTCGATAGCATGGACATTCCATCCCCACAATGCCACTATAGACCTTGTCTTCTTTGG CACATTTATCTCCCCGTCCGGTTGGGTGGCACTAGGGATCAACCCGACCACCCCTCAGATGACCGGGACACGAGCCTTGATCGCCTTTTCGGACCCCAAC TCGGGCCAATTGGTCCTCCTGCCTTACATTCTAGACCCTAGTGTCAAGCTCCAGAAGACACCGCTCATGTCCCAACCACTGGACATCCATCTCACATCCT CGTCAGCTTCTCTCTACGGAGGGAAGATGGCCACGATCCACAATGGGGCAGCGGTCCAAATCTTTGCCACGTTGAGGCTCGAGCCCAACCGGACCAAGGT CCACTTTGTGTGGAATCGAGGTTTGTACGTCCAAGGATACTCACCAACCATACACCCAACTACCTCGAACGATCTCTCATCCATCTCCACAATCCACATC CTATCAGGGCTCACCACATCGCATGTCGAGCACAACACCAAGACACTCAAGCTAGTCCATGGCATCATGAATGCCATCTCGTGGGGTGTGATGCTCCCCT CGGGAGCCATCATTGCAAGGTACCTACGCCACATTCAATCATTAGGACCTGTGTGGTTCTATGTCCATGCAAGTGTACAACTTTTCGCCTTCTTTCTAGG TACGATTGGATTTGTCATAGGACTGAATCTGGGTACATCGTCCCCCGGGGTGACCTATGGGCTCCACAGAAAGTTGGGATTCGCGGTGTTCTGTTTGGCC GGGCTGCAGACTCTGGCATTGTTGTTCAGGCCAAAGACTACTAACAAGTATAGGAAGTATTGGAAGTCATACCACCATTTTGTCGGGTATGCTTGTGTGG TGATTGGGGTGGTGAATGTGTTTGAAGGGTTTGATGTTATGGGTGTTGGAAGGTCCTATGGGAAATTAGGGTATTGTTTGTGTTTGTCTACTTTGATTGG AGCTTGCATTGCCTTGGAGGTGAATTCATGGGTGGTTTTCTGTAGGAAGTCTAAAGAAGAGAAGCTTAAAAGAGAAGGAGTGATTTCTGAGAAAGGAAGT GATCACATTCATAGTTAA
AA sequence Show only first row Show all	>Lus10001162 pacid=23155044 polypeptide=Lus10001162 locus=Lus10001162.g ID=Lus10001162.BGIv1.0 annot-version=v1.0 MPLCHFFLLPLFFLTVAAAAASSSSATCSTTTAKKTFQKCMTLPTQQASIAWTFHPHNATIDLVFFGTFISPSGWVALGINPTTPQMTGTRALIAFSDPN SGQLVLLPYILDPSVKLQKTPLMSQPLDIHLTSSSASLYGGKMATIHNGAAVQIFATLRLEPNRTKVHFVWNRGLYVQGYSPTIHPTTSNDLSSISTIHI LSGLTTSHVEHNTKTLKLVHGIMNAISWGVMLPSGAIIARYLRHIQSLGPVWFYVHASVQLFAFFLGTIGFVIGLNLGTSSPGVTYGLHRKLGFAVFCLA GLQTLALLFRPKTTNKYRKYWKSYHHFVGYACVVIGVVNVFEGFDVMGVGRSYGKLGYCLCLSTLIGACIALEVNSWVVFCRKSKEEKLKREGVISEKGS DHIHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	0	1
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	1.4	0.9895
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10034289 [exp]	2.8	0.9822
AT3G13130			unknown protein		Lus10016611 [exp]	4.5	0.9792
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	4.5	0.9811
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	4.9	0.9814
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10019929 [exp]	4.9	0.9791
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	5.5	0.9754
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10017340 [exp]	5.9	0.9761
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026657 [exp]	8.7	0.9691
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	8.9	0.9688

Compare expression of checked genes

Lus10001162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.