Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04865 320 / 8e-105 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 148 / 1e-40 Aminotransferase-like, plant mobile domain family protein (.1) AT1G17930 132 / 4e-35 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 71 / 2e-13 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012346 [exp] 447 / 1e-156 AT2G04865 347 / 1e-112 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006393 [exp] 442 / 3e-154 AT2G04865 331 / 5e-106 Aminotransferase-like, plant mobile domain family protein (.1) Lus10001737 [exp] 360 / 1e-119 AT2G04865 636 / 0.0 Aminotransferase-like, plant mobile domain family protein (.1) Lus10007358 [exp] 321 / 1e-107 AT2G04865 259 / 2e-79 Aminotransferase-like, plant mobile domain family protein (.1) Lus10042411 [exp] 62 / 1e-10 AT1G48120 56 / 2e-08 hydrolases;protein serine/threonine phosphatases (.1) Lus10033204 [exp] 50 / 7e-07 AT2G25010 50 / 4e-07 Aminotransferase-like, plant mobile domain family protein (.1) Lus10026467 [exp] 49 / 1e-06 ND / Lus10000467 [exp] 48 / 1e-06 ND 37 / 0.005 Lus10027682 [exp] 46 / 4e-06 AT1G48120 45 / 4e-06 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10001163 pacid=23155035 polypeptide=Lus10001163 locus=Lus10001163.g ID=Lus10001163.BGIv1.0 annot-version=v1.0 ATGGACCTCAGTCCTGGACCAGTTGATGCTTCTGTGCTGTATGAACAGGACAAGCATGTCTCTGCAGCTGTATGGGATGGCCAGTGCTGGAGTTACTTCC ACCTTAACATTGGGCGTCCAAAACTCAATCGGGATCCTATCCACAATAGCTTTCCCTTTGTACTAAAGTGGAAAGGAAAGCAAAGTGGGCCGACAACAAA CCGTGATGTGGTCTTTTATCGGAAGGCTTTGGACGCATTGAAAGCAGATGATGTAGAGTGGCTTCCATACAAGTATATGGACACGATATCAATACCAGAG ACCATCCAAGAGACTCTACTTCTGGCAAGATCAAAGACAATGCTCCTATGCTTTGACAAGGCCGAGAGACACCTACCTGATCGGTGCTTGAGGCAGTACG GCATGTGTCAACCTATCCCAGAAGATGTGCCCCAATGGGTGAGAAAGAGTCGAGGAGTTGATGGCGGGGTAGACTTGTCCGGGAAAATGGAGTCCGAGCT TAGTGAATGGGCTGGTCGCTATCTCCATATCGTGGAAGGCATTGATGCTATGGATGAGACTGCATCCGCTGAATATATGCAATGGTACTTAAAGATCACG AGGAAAGTAGTCGGGAGACCTATCTCGCTGTCAACTGAATTTCAGAGAACAATTGCGGGATTAAGAGAGATAGCTTACTTAGCAGATTCGTTTTTGACAA AGGGGTTGGACGGACAACAGTTTGAGTCAATTTCGAGGATTAGATATATTGCACAGGACTGTTTGAAGGACCAGTCAGCAAGTCCAGCTGCTGCTACTGC CGTAACGGTTGAGACCCCACCCGCGGAACTTGGGAAAAGGATAAGGGGGAAGGAGAGGGTCAGACGGAAGGGTAGTGGGAATCGCCGGAGAAAAGATGAG GAAACGCCGGAGAAAAGATGA
AA sequence Show only first row Show all	>Lus10001163 pacid=23155035 polypeptide=Lus10001163 locus=Lus10001163.g ID=Lus10001163.BGIv1.0 annot-version=v1.0 MDLSPGPVDASVLYEQDKHVSAAVWDGQCWSYFHLNIGRPKLNRDPIHNSFPFVLKWKGKQSGPTTNRDVVFYRKALDALKADDVEWLPYKYMDTISIPE TIQETLLLARSKTMLLCFDKAERHLPDRCLRQYGMCQPIPEDVPQWVRKSRGVDGGVDLSGKMESELSEWAGRYLHIVEGIDAMDETASAEYMQWYLKIT RKVVGRPISLSTEFQRTIAGLREIAYLADSFLTKGLDGQQFESISRIRYIAQDCLKDQSASPAAATAVTVETPPAELGKRIRGKERVRRKGSGNRRRKDE ETPEKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04865			Aminotransferase-like, plant m...		Lus10001163 [exp]	0	1
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	12.5	0.8821
AT3G22790			Kinase interacting (KIP1-like)...		Lus10006606 [exp]	16.3	0.8569
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	16.9	0.8812
AT5G64420			DNA polymerase V family (.1)		Lus10025659 [exp]	18.3	0.8661
AT5G64950			Mitochondrial transcription te...		Lus10029199 [exp]	18.3	0.8589
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	20.2	0.8394
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	22.0	0.8647
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	22.2	0.8755
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	26.8	0.8685
AT3G55160			unknown protein		Lus10015366 [exp]	30.9	0.8698

Compare expression of checked genes

Lus10001163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.