Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48130 581 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G67385 217 / 4e-62 Phototropic-responsive NPH3 family protein (.1) AT1G30440 209 / 7e-59 Phototropic-responsive NPH3 family protein (.1) AT5G67440 207 / 9e-59 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT5G13600 205 / 7e-58 Phototropic-responsive NPH3 family protein (.1) AT3G08660 203 / 3e-57 Phototropic-responsive NPH3 family protein (.1) AT5G10250 201 / 2e-56 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT2G47860 201 / 3e-56 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 198 / 3e-55 Phototropic-responsive NPH3 family protein (.1) AT4G31820 197 / 4e-55 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001738 [exp] 1168 / 0 AT5G48130 577 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 228 / 9e-66 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 222 / 2e-63 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 212 / 3e-60 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 211 / 7e-60 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 209 / 3e-59 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 209 / 3e-59 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 207 / 4e-58 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 206 / 9e-58 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164000 [exp] 827 / 0 AT5G48130 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 230 / 8e-67 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 224 / 2e-64 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 214 / 5e-61 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 211 / 7e-60 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 211 / 1e-59 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.002G242300 [exp] 210 / 1e-59 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 209 / 3e-59 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 207 / 2e-58 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 207 / 2e-58 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10001164 pacid=23155049 polypeptide=Lus10001164 locus=Lus10001164.g ID=Lus10001164.BGIv1.0 annot-version=v1.0 ATGGAAACTGCAAGCTCAAAAGACAGTTCAGTGGCTTCCTCCTCCAGCCCCATCTCTTCATCTCCTAATGTTAGAGCTCTTCTTAAGATCAAGATACTCT CATGGAGCCAAGAGACTGGTTTGCCTGTGACTGTCCGTGTTCGCCTTGGAGAAAGGACACTCAGCCTTCACAAGAATCCCCTTTTCTCAAAGAGTGGATA CTTCAAGAAAAGACTGACGGAAACGACTGAGGTTGAGCTGCCACCAGATTTCCCAGGAGGGCCGGAGACCTTCGAGATGATAGCTCTATTTGCATATGGC TCGTCAACTTCGCCGATAGACCCTTTCAACGTGGCAGCACTGCGCTGCGCAGCAGAGTTTCTAGAGATGAACGAAGAGCACTCCTCCTTGGGGAACAACC TCTGTGAGTGGCTCGATCTCTACTTGAATCAAGTCGTGTTGCAGAACTGGGACGATACTTTGATCGTCCTCCAGAGTTGCCACCAGACATTGCTTCCCTG GTGCGAGGAGCTTCTCATAGTCAGCAGGTGCATCGAGTCGCTATCCTTCATGGCGTGTATGGAGATTCTCGATCCGGAGAGGAGGAGGGATCAGATTCAG AAGCCGGAAAGTTTCGATCTTTGGATCAAGGACCTCATTGGTCTTCCATTTGTGTTCTTCACAAGGATTATAGGGTCCCTTAGAAGGCAAGGCATGAAAG AAAAGTACGTCACTCCCATCATTGTGTTCTATGCTAACAAATGGGTCATCTCCGAGAAGACTGACTCGAACGCGAATGAAAACGTAGGATCCATACTGCA AGGCGTTCTCGATCTTCTGGCCCTCCAAGAAAAATCCAGCAGAGCAGTTCCAGTAGGGTTTTACTTCGGATTGCTGTCGAGATCACTTGAAGTTGGTCTC GGAAATGCCAGCAAGGCAAAGTTGCAAGATCAGATTGTGACTCTTTTGCATTTGGCTCAAGTGGAAGACTTTCTCTTCCCTAAGAAAGGACCAGATTCAG ATTCATCAATCTCTATCATGGAGAAGATCTTTTCGGGATACGTGATGTTCCGCCACAATGCAAGCCATACTTCCATTGTTGCGGAACTATGGGATTCATA TCTAACACATATAGTATTCGATCCGAAAATGGAGCCTAAGAGGTTTCAAGAACTGTTAGAAACAGTGCCTATTTCTTGGCGGCAGAGCCACGATCAACTT TATCGAGCTATGAACAAGTTCCTACAGGCGCATCGAGATCTCTCCCAGGATGAAAAGTCTGAAGTCTGCAAGTACCTCAATTGCCAAAGCCTGTCACAGG AAGCATGTGTCGAAGCAGTTCAAAATGACATGCTGCCTCTGAGATTGATCGTCCAGATTCTATTCGTTCAGCAGCTGAACACTCACCATGCTTTCAAAGA ATGCTCGGACTCGTTCCGGTACGCACAATGTGGTGGAGACTTCTTCTCCGGAAGCCTAACGACTAGCTCACGGTGTCCCAAGAGCCAGAATCTGACAGAG AGTCCGTACACTGACGGAGGAGCAGAAACACTGAACTTCTACTTGCAGAAGGAGCTTACCTCCGAGAGATGGGATGACTTCTCACGCAAGGAATACGAGT CCACGAGCTTTCGGATTCAGAGCCTTGAGCAGGAACTTGTGTCACTAAAGAAGAACCTTCAGCTGCAGAAAGGTGACAAGATGGAATCTAACAAGCAGCA AAGCATGGAGTCCTATGGCATGGAAACAAGATCTCTAAGCAAGAAGGGGAACCAAGTTCCAGGATGCGTAAACTCTGTCAATTTAGCTTCGCAGAGAAAG TACGCCCGTAAGCTGCTTAAATTTTTCCGAAGGATCAGCTCGTTTGGAACTCGAAAATCAAAACGAAAAACAGCTGCTCAAGATCTGTGA
AA sequence Show only first row Show all	>Lus10001164 pacid=23155049 polypeptide=Lus10001164 locus=Lus10001164.g ID=Lus10001164.BGIv1.0 annot-version=v1.0 METASSKDSSVASSSSPISSSPNVRALLKIKILSWSQETGLPVTVRVRLGERTLSLHKNPLFSKSGYFKKRLTETTEVELPPDFPGGPETFEMIALFAYG SSTSPIDPFNVAALRCAAEFLEMNEEHSSLGNNLCEWLDLYLNQVVLQNWDDTLIVLQSCHQTLLPWCEELLIVSRCIESLSFMACMEILDPERRRDQIQ KPESFDLWIKDLIGLPFVFFTRIIGSLRRQGMKEKYVTPIIVFYANKWVISEKTDSNANENVGSILQGVLDLLALQEKSSRAVPVGFYFGLLSRSLEVGL GNASKAKLQDQIVTLLHLAQVEDFLFPKKGPDSDSSISIMEKIFSGYVMFRHNASHTSIVAELWDSYLTHIVFDPKMEPKRFQELLETVPISWRQSHDQL YRAMNKFLQAHRDLSQDEKSEVCKYLNCQSLSQEACVEAVQNDMLPLRLIVQILFVQQLNTHHAFKECSDSFRYAQCGGDFFSGSLTTSSRCPKSQNLTE SPYTDGGAETLNFYLQKELTSERWDDFSRKEYESTSFRIQSLEQELVSLKKNLQLQKGDKMESNKQQSMESYGMETRSLSKKGNQVPGCVNSVNLASQRK YARKLLKFFRRISSFGTRKSKRKTAAQDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001164 [exp]	0	1
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	1.0	0.9163
					Lus10018556 [exp]	7.6	0.8982
AT2G45410	AS2	LBD19	LOB domain-containing protein ...		Lus10009298 [exp]	8.7	0.8602
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	13.3	0.8680
AT3G19200			unknown protein		Lus10014046 [exp]	13.9	0.8660
					Lus10029735 [exp]	14.1	0.8662
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	15.1	0.8791
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001738 [exp]	19.0	0.8366
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	23.5	0.8933
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030572 [exp]	26.7	0.8381

Compare expression of checked genes

Lus10001164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.