Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04900 132 / 2e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164500 [exp] 139 / 2e-43 AT2G04900 179 / 1e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04241 [flax] [poplar] DUF423 Protein of unknown function (DUF423)
Representative CDS sequence Show only first row Show all	>Lus10001166 pacid=23155045 polypeptide=Lus10001166 locus=Lus10001166.g ID=Lus10001166.BGIv1.0 annot-version=v1.0 ATGCCAATTCAGGAACTCCCTGGCTATGCAAGTAATACCCAACAAAAAGAGTTGAATAACGACTCTTCTATGATCACGTGTAACCTGCTTAGCTTTCAAT GCCGGCTCAAAAGGATGAAAGATTTGAAGGAAACGTTAGTTGCATTACCTGATCAAGCTAAGCCACCAACCCGATCGAGCTCAAATGGTATGGCTGCACT CGGATTGGGCACGTATGGTGCCCACGGATTCAAGCCTCAGAACGCTGCTTACAACGAGGTGTGGAGGACAGCTTCTCTGTATCATTTGGTTCACACTGCT GCACTTATAGCGGCTCCCATGACTAAATATCCCAACTTTTTTGGGGGACTGTTGACCACTGGGATTCTTGCATTTTCTGGGACGTGTTATACTGTTGCAT ACCTTGAGGATAGATCCTACGCGAAGATAGCTCCATTTGGTGGGTTTGCGTTCATTGCTGCTTGGGCGAGCTTGCTTTTCTGA
AA sequence Show only first row Show all	>Lus10001166 pacid=23155045 polypeptide=Lus10001166 locus=Lus10001166.g ID=Lus10001166.BGIv1.0 annot-version=v1.0 MPIQELPGYASNTQQKELNNDSSMITCNLLSFQCRLKRMKDLKETLVALPDQAKPPTRSSSNGMAALGLGTYGAHGFKPQNAAYNEVWRTASLYHLVHTA ALIAAPMTKYPNFFGGLLTTGILAFSGTCYTVAYLEDRSYAKIAPFGGFAFIAAWASLLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04900			unknown protein		Lus10001166 [exp]	0	1
AT4G17010			unknown protein		Lus10006582 [exp]	4.9	0.8498
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	5.1	0.8477
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	5.6	0.8939
AT1G76200			unknown protein		Lus10016001 [exp]	6.3	0.8520
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	6.7	0.8779
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10041075 [exp]	6.8	0.8786
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	8.8	0.8600
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	9.8	0.8724
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	10.2	0.8567
AT2G40600			appr-1-p processing enzyme fam...		Lus10029039 [exp]	10.7	0.8362

Compare expression of checked genes

Lus10001166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.