Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 112 / 4e-29 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42920 110 / 1e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G45350 110 / 2e-28 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06150 110 / 2e-28 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G31430 109 / 2e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G48910 108 / 5e-28 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 108 / 7e-28 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 107 / 9e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G15930 107 / 1e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 103 / 3e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014707 [exp] 111 / 7e-29 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 110 / 2e-28 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10010901 [exp] 108 / 3e-28 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 109 / 5e-28 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 108 / 1e-27 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 107 / 2e-27 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 106 / 4e-27 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 105 / 6e-27 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010908 [exp] 105 / 9e-27 AT5G48910 410 / 5e-135 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103600 [exp] 120 / 3e-32 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G052300 [exp] 116 / 7e-31 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G043400 [exp] 116 / 1e-30 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 115 / 2e-30 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G044700 [exp] 113 / 2e-29 AT3G22690 582 / 0.0 unknown protein Potri.009G044700 [exp] 112 / 3e-29 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 111 / 5e-29 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 109 / 3e-28 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G074000 [exp] 109 / 3e-28 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G068800 [exp] 108 / 5e-28 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001168 pacid=23155039 polypeptide=Lus10001168 locus=Lus10001168.g ID=Lus10001168.BGIv1.0 annot-version=v1.0 ATGGAACTCCATGATTCATGGATTCATGGATGTGATTCAAATGGAAAGTTCACTGAAGCTTTGAAGGTTTTAGTGAGTATGCTGGAAGAAGGATTTGTGC CCAATGATATCGCAATGGTCAGTTCTGTTTCTTTTGTGGCAGGGTTAGGCAGTCTTAGCAAGGCGAAATGGTTCCTCTTTTACATAGTTAAAAGAGGGTT CAAGGTTGACGGAGTGCGCGGGACATCATTGATTCATATGTATTCCAAGCTTGGAAGCATCGAGAGTGCTAGAAAGATATTTGAATCAGTAAGCAAGAGG AGAAAACTCGGGCACTGGACTGCTATGATACTTGGCTTGGGAATGCACGGCTTAGCTGGCATTGCCATGGAGCTGTTTCACGAGATGCGTCAGATCAAAT TAAAGCCTCATGCCAACACTTTCGTCGGGTTGTTGAACGCATGTAGCCACGCAGGCCGGTGGATGATGGCCGTAAGTACTTCAACATGA
AA sequence Show only first row Show all	>Lus10001168 pacid=23155039 polypeptide=Lus10001168 locus=Lus10001168.g ID=Lus10001168.BGIv1.0 annot-version=v1.0 MELHDSWIHGCDSNGKFTEALKVLVSMLEEGFVPNDIAMVSSVSFVAGLGSLSKAKWFLFYIVKRGFKVDGVRGTSLIHMYSKLGSIESARKIFESVSKR RKLGHWTAMILGLGMHGLAGIAMELFHEMRQIKLKPHANTFVGLLNACSHAGRWMMAVSTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	6.6	0.7490
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	9.2	0.7192
					Lus10036102 [exp]	10.8	0.7489
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	11.4	0.7204
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	14.3	0.6349
AT5G21050			unknown protein		Lus10019547 [exp]	17.0	0.6821
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	19.2	0.6511
AT4G18335			unknown protein		Lus10028125 [exp]	20.1	0.6380
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	26.6	0.7096
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014110 [exp]	28.6	0.6443

Compare expression of checked genes

Lus10001168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.