Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27690 446 / 2e-160 LHCB2.3, LHCB2:4 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) AT2G05100 444 / 8e-160 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT2G05070 444 / 1e-159 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) AT1G29920 386 / 1e-136 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 386 / 1e-136 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT1G29930 384 / 4e-136 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT2G34420 382 / 2e-135 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT2G34430 376 / 8e-133 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1) AT5G54270 340 / 7e-119 LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, light-harvesting chlorophyll B-binding protein 3 (.1) AT1G76570 193 / 3e-60 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001741 [exp] 503 / 0 AT3G27690 481 / 1e-174 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10008191 [exp] 406 / 1e-144 AT1G29910 452 / 5e-163 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10027966 [exp] 399 / 6e-142 AT1G29910 446 / 2e-160 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10042219 [exp] 397 / 6e-141 AT1G29930 444 / 1e-159 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10008594 [exp] 395 / 2e-140 AT1G29930 445 / 4e-160 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10037875 [exp] 349 / 4e-122 AT5G54270 460 / 3e-166 light-harvesting chlorophyll B-binding protein 3 (.1) Lus10007362 [exp] 345 / 2e-121 AT1G29930 370 / 5e-131 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10038575 [exp] 342 / 3e-119 AT5G54270 462 / 9e-167 light-harvesting chlorophyll B-binding protein 3 (.1) Lus10038490 [exp] 281 / 6e-96 AT1G29910 337 / 2e-118 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165100 [exp] 456 / 2e-164 AT2G05100 507 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) Potri.002G221400 [exp] 452 / 4e-163 AT2G05070 499 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) Potri.005G239300 [exp] 395 / 2e-140 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239200 [exp] 393 / 1e-139 AT2G34430 484 / 2e-175 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.011G079500 [exp] 391 / 1e-138 AT2G34430 480 / 6e-174 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.002G189300 [exp] 381 / 9e-135 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.001G407100 [exp] 338 / 6e-118 AT5G54270 478 / 2e-173 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.011G126700 [exp] 333 / 2e-116 AT5G54270 446 / 3e-161 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.005G258600 [exp] 207 / 3e-65 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1) Potri.019G063101 [exp] 180 / 2e-55 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10001169 pacid=23155051 polypeptide=Lus10001169 locus=Lus10001169.g ID=Lus10001169.BGIv1.0 annot-version=v1.0 ATGGCAGCAACCTCTGGGTTCCAACAATCTGCATTCGCTGGCCAGACTACCCTCAATCGGTCCAATGAGCGTACCAGAAAGGTTGCTGCTCTCGGTGGCA GCCGCTTCAACATGCGCCGTACTGTCAAGAGTGCTCCCCAAAGCATTTGGTACGGAGCAGACCGTCCCAAGTACTTGGGTCCATTCTCAGAGCAGACACC ATCATACCTGACAGGAGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGTCTATCAGCAGACCCAGAGACATTCGCCAAGAACCGTGAGCTTGAGGTT ATCCACTGCAGGTGGGCTATGCTTGGTGCACTTGGTTGTGTCTTCCCAGAAATCCTTTCCAAGAACGGAGTCAAGTTCGGTGAGGCAGTCTGGTTCAAGG CTGGAGCTCAGATCTTCTCCGAAGGAGGTCTGGATTACCTCGGAAACCCGAACTTGGTCCATGCTCAGAGCATCCTTGCAATCTGGGCTTGCCAGGTTGT GCTCATGGGATTCGTTGAAGGTTACAGAGTTGGTGGAGGACCTCTCGGAGAAGGGCTTGACCCACTTTATCCTGGTGGCTCCTTCGACCCACTTGGCCTG GCAGATGATCCTGAGGCCTTTGCTGAGTTGAAGGTCAAGGAGATCAAGAATGGCCGCCTCGCTATGTTCTCCATGTTTGGCTTCTTCGTCCAGGCCATTG TTACTGGCAAAGGTCCCGTTGAGAACCTTTATGACCACATTGCTGACCCTGTAGCCAACAATGCTTGGGCTTTCGCCACCAACTTTGTCCCCGGCAAGTG A
AA sequence Show only first row Show all	>Lus10001169 pacid=23155051 polypeptide=Lus10001169 locus=Lus10001169.g ID=Lus10001169.BGIv1.0 annot-version=v1.0 MAATSGFQQSAFAGQTTLNRSNERTRKVAALGGSRFNMRRTVKSAPQSIWYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPLYPGGSFDPLGL ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHIADPVANNAWAFATNFVPGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001169 [exp]	0	1
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	2.4	0.9375
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10027966 [exp]	5.2	0.9039
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10013057 [exp]	6.5	0.8773
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10042931 [exp]	6.5	0.8889
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	8.7	0.9259
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	11.7	0.9263
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	13.0	0.9029
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	13.3	0.9050
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	14.8	0.9202
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	18.2	0.9201

Compare expression of checked genes

Lus10001169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.