Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05120 1395 / 0 Nucleoporin, Nup133/Nup155-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001742 [exp] 2518 / 0 AT2G05120 1436 / 0.0 Nucleoporin, Nup133/Nup155-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G221300 [exp] 1732 / 0 AT2G05120 1423 / 0.0 Nucleoporin, Nup133/Nup155-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03177 [flax] [poplar] Nucleoporin_C Non-repetitive/WGA-negative nucleoporin C-terminal CL0186 [flax] [poplar] Beta_propeller PF08801 [flax] [poplar] Nucleoporin_N Nup133 N terminal like
Representative CDS sequence Show only first row Show all	>Lus10001170 pacid=23155037 polypeptide=Lus10001170 locus=Lus10001170.g ID=Lus10001170.BGIv1.0 annot-version=v1.0 ATGTTCTCTCCAGCAGCGAAGAGGTCAACCTTCAGCTCTCGCCGTGACGGAAATCTAGGACAATCCACACCACCAGCAGCAGCATCTCCTACCTCTCCCT TCACTCCTCTGCCTGATGACCGCAAGTCAGTCCTCTTCGACAACAATGCAACAGTACCCGACCGACCTGCTTCCGGAACTCCAGCACCTTGGGCGCCGCC TCGTCTCTCCGTTATTGCCAGAATTCCACCGACGGGAAAGGTTGAGAAAGGGAGTCAGGACGATCCAATCAAACCCGTGTATGTTGGAGAATTCCCTCAG GCAGTCCGTGACGAACAAGCTAGATTGTTGCAGAAGCATAATACTGGCGATACACTAGTGTCTGGTGGTATGGATAAAATAACTTGTCTTTCGTGGATTA TTTGTGGGAGTAAAGTCTATGTTTGGAGTTACTTGTCATCTGCAGCTTCGAAAAAATGCACGGTTTTGGATATGCCATCAGACATTCTGCAGTATGGAGA TATTGGTAAAAATTCATATCATGGTAGCAGTTGGTTGTTATCTTTTGTTGTCTGGGATAGAACCAACCAAGGAGGCAATAAAGGTCTGCAGGCTAGCGAT TCTGTTGGTATTATAATGTGCAACCAAAAAACTCGAGCTGTTATTTACTGGCCTGAGATTAATGCTGATTGGAGATCTGCCCCCGTTGGTACTTTCATAC CTTTTGATGAACCTGAGGTCTCTTCTTCCCCTGTTGATGCAAGGACCACAGCTAGTAGGCAGCAGCATCGTAGCAGGTCTGCAAGTAGTTTAACGAAATT ACATTCACTCAACTCTTTGATTGTTTCTGCTGTACCCGCTGCAAAGCATGTTTGTGTAGCTTTTGCATGTTGTTCCAATGGTGAGCTCTGGCAGTTTACA TGTAGTCCCATTGGTATTGAGCATAGGAAAGTATATCAGAAAGAATGGAGTAAGTCCTCCCAGGGTAGTGACAGTGGGCAATTTGTTGGAAGCAAGGGCT ACCCAAGGTCGCTTGTATGGCGCTTCCCTACAACATCCATGGAGGATTCCAGTAGAGAATTTTTTCTGCTGACTGATCAAGAGATAAAGTGTTTTAGCGT TACATTTGACCCTGCAGTAAAGGCCGCTGAGATCTGGTCACATGAAATTGTCAGCAGTGATGGTGATTTGGGTATTAAGAAGGATTTAGCTGGACAGAAA CGAATCTGGCCTCTGGATGTACAGGTGTATGAACGTGGCAAAGTGCTAACTGTACTAGTTGCCATTTTCTGCATGGATCGGGTTAGCAGTTCTAGCTACA CTCAATATTCACTTTTGACCATGCAATATAATTCTCAAGTAAGCAGATCTTCTAATTTACATGAGAGAGTATTGGAGAAGACGGCTCCAATCCAGGAGAT TATTCCCAAAGCAAGACTAGAGGAGGAAGATTTCTTGTTCTCCATGAGACTTCGAGTAGGAGGCAAGCCAGCAGGTTCAGCAGTCATCCTTTCTGGTGAT GGAACAGCAACGGTATCTCACTACTACCGAAGTAAAACCCGACTGTATCAATTTGATCTTCCATATGATGCAGGGAAAGTTCTAGATGCATCAGTTCTGC CATCAGCCGATGATGGTGAAGATGGTGCATGGGTTATATTAACAGAGAAAGCAGGAATATGGGTTATACCAGAAAAAGCTGTTGTACTTGGAGGAGTAGA ACCACCTGAGCGAAGCTTGTCGCGTAAAGGGAGCTCAAATGAAAGATCTTCACAGGAAGAAAAGCGAAATGTTGCATTTTCTGGCTCCATTGCTCCTAGA AGGGTTAGCTCTGCAGCTTGGGATGTTGGTGATAGACAAAGGGCTGCTATGACTGGAATTGGACGCTCCACTGTGCAAGATGAGGAGTCAGAAGCTTTGC TCGGTCAGGTGTTCCATGATTTCCTGCTGACTGGGCAGGTGGACAGTTTGGTTGAAAAGCTGCGAAACTCTGGAGCATTTGACAGGGATGGAGAAACCAA TGTCTTTGCTCGGACAAGCAAGTCAATCGTTGATACTTTAGCAAAACATTGGACAACTACCAGGGGTGTTGAGATTGTCTCTATGTCTATTGTTTCCAGC CAACTCATGGATAAGCAGCAGAAGCATGAAAAGTTTCTGCAGTTTCTTGCCTTGTCAAAATGCCATGAAGAACTTTCATCTAAACAGAGACAATCTTTGC TAACAATCTTGGAACACGGTGAGAAACTTAATGGAATGATACATCTGAGAGAATTGCAGAATACAATCAAGCAGAACCGTGCAACTGCAGCGAGCATGTT ACCTGGTTCAGAAGTTCAAATTTCAGGTGCTCTTTGGGATCTAATTCAGTTAGTTGGCGAGAGAGCCCGTCGGAATACTGTCCTTCTCATGGACAGGGAC AATGCTGAAGTATTCTTCAGCAAGGTTTCAGATCTTGAAGAGTTATTTCATTGCCTGGACAGACTCTTGGAGTACATTTTAAACGAGGACCAGCCACTTG AGGTTCAGATTCAAAGAGCTTCTGAACTTTCAAATGTTATCGTCTCCATTTTTCGGGCAGCTGCTTTCTACAGGGATGATCACCATATGTGGTATCCACC TCCTGAAGGGTTAACTCCCTGGAATTGCCAACCTGCGGTGCGGAATGGGATGTGGAGAGTGGCTTCATCCATGGTCCAGTTGTTGAGTGAAATATCAAAG CTTGGGGATTCTGCCAGTTTGGATTTCCATGGCCATTTGGAGGGTCTCACGGAAGTTTTACTCGAGGCGTATGCTGGTGCTATTGAAGCAAAGCTGGGAC GTGGTGAAGAACACAAGGGGATATCAGACGAGTATTGGAAAATAAGGGATTTCCTTCTTGACTCTCTTTATCACCAAGTGAAACATCTTGTGGAAGGGAA CCACCAGATTTTGGTTGTAGAAACAGGTGCCCAACAGATAGAAATGCTCAGGAAGCTTTCTTCAAGCTTGTTGTCAATTGCTAAAAGGCACGAAGCTTAT AACATCATTTGGAGTATTTGCTGTGATTTTAATGATTCGGAGTTGCTGAAAAAACTCATGCACGAGAGTATGGGACCAAAAGGAGGATTCAGTTATTTTG TGTTCAAACAATTGTACAAGAAGAGGCAATTCGCGAAGCTTCTCAGGCTCGGGGAGGAGTTCCAGCAAGAGCTGTCCATCTTTTTAAAAGACCACCAAGA TCTTCTTTGGCTTCATGAGTTGTTCCTTCATCAGTTTTCCTCTGCTTCAGAAGATCTTCATACATTGGCGCTTTCTCAAGATGAGTGTTCCAGTCCAGAA GACGATGAAGATGCTATGAATGATCAGCAGCATCCCGGTACTGGAATAACTGTTGCAGATAGGAAGCGTCTTTTGAATCTGTCGAAGATTGCTGCCATGG CAGGTAAAAGCATTGATTATCAGTCGAAAGTGAAGCGCATCGAGGCAGACTTGAAGATCTTGAAACTGCAGGCAGAGATTATTGTATTATTAACAGCCGA AAAACCAGAGCTCAATGATGAAAACCGGTTATTCCGACCGGAGGAGCTGATCGAGCTCTGCCTTAAATCTGGAACCCGGGACTTGGCGCTACGTGCATTC GACATCTTTGCATGGACAAGCTCATCCTTTCGCGAAAGCCACAGGAGCCTCTTGGAGGAATGCTGGAAGAACGCAGCCAACCAGGACAACTGGGGAGAGC TACAGAGAGCGCACGACATCGAAGGCTGGAGCGACGAGGAAATGCTGAGGCACCTACGAGAAACGGTGCTCTTCCAGGCGTCGAGCCGATGCTATGGCTC CCAAGGAGAGACGATCGAGGAGGAGTTTGAAGCGGTGTTGCCACTAAGGAAAGACGGCTCGGATTCTTCTAGTCAGGGCGGTGAGGCGGCGGAGTACTCG GTAGAGACACTGCTGCTGCAGCACAATGAGTTTCCTGATGCAGGGGAGCTGATGCTGACCGCTGCTGTATTGGGTGGCGTCCAGGAAGATGTCAAAGTAG ACGAGAGTTCTCCTATGGAGTAG
AA sequence Show only first row Show all	>Lus10001170 pacid=23155037 polypeptide=Lus10001170 locus=Lus10001170.g ID=Lus10001170.BGIv1.0 annot-version=v1.0 MFSPAAKRSTFSSRRDGNLGQSTPPAAASPTSPFTPLPDDRKSVLFDNNATVPDRPASGTPAPWAPPRLSVIARIPPTGKVEKGSQDDPIKPVYVGEFPQ AVRDEQARLLQKHNTGDTLVSGGMDKITCLSWIICGSKVYVWSYLSSAASKKCTVLDMPSDILQYGDIGKNSYHGSSWLLSFVVWDRTNQGGNKGLQASD SVGIIMCNQKTRAVIYWPEINADWRSAPVGTFIPFDEPEVSSSPVDARTTASRQQHRSRSASSLTKLHSLNSLIVSAVPAAKHVCVAFACCSNGELWQFT CSPIGIEHRKVYQKEWSKSSQGSDSGQFVGSKGYPRSLVWRFPTTSMEDSSREFFLLTDQEIKCFSVTFDPAVKAAEIWSHEIVSSDGDLGIKKDLAGQK RIWPLDVQVYERGKVLTVLVAIFCMDRVSSSSYTQYSLLTMQYNSQVSRSSNLHERVLEKTAPIQEIIPKARLEEEDFLFSMRLRVGGKPAGSAVILSGD GTATVSHYYRSKTRLYQFDLPYDAGKVLDASVLPSADDGEDGAWVILTEKAGIWVIPEKAVVLGGVEPPERSLSRKGSSNERSSQEEKRNVAFSGSIAPR RVSSAAWDVGDRQRAAMTGIGRSTVQDEESEALLGQVFHDFLLTGQVDSLVEKLRNSGAFDRDGETNVFARTSKSIVDTLAKHWTTTRGVEIVSMSIVSS QLMDKQQKHEKFLQFLALSKCHEELSSKQRQSLLTILEHGEKLNGMIHLRELQNTIKQNRATAASMLPGSEVQISGALWDLIQLVGERARRNTVLLMDRD NAEVFFSKVSDLEELFHCLDRLLEYILNEDQPLEVQIQRASELSNVIVSIFRAAAFYRDDHHMWYPPPEGLTPWNCQPAVRNGMWRVASSMVQLLSEISK LGDSASLDFHGHLEGLTEVLLEAYAGAIEAKLGRGEEHKGISDEYWKIRDFLLDSLYHQVKHLVEGNHQILVVETGAQQIEMLRKLSSSLLSIAKRHEAY NIIWSICCDFNDSELLKKLMHESMGPKGGFSYFVFKQLYKKRQFAKLLRLGEEFQQELSIFLKDHQDLLWLHELFLHQFSSASEDLHTLALSQDECSSPE DDEDAMNDQQHPGTGITVADRKRLLNLSKIAAMAGKSIDYQSKVKRIEADLKILKLQAEIIVLLTAEKPELNDENRLFRPEELIELCLKSGTRDLALRAF DIFAWTSSSFRESHRSLLEECWKNAANQDNWGELQRAHDIEGWSDEEMLRHLRETVLFQASSRCYGSQGETIEEEFEAVLPLRKDGSDSSSQGGEAAEYS VETLLLQHNEFPDAGELMLTAAVLGGVQEDVKVDESSPME

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	0	1
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	1.7	0.9722
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	2.4	0.9649
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	2.4	0.9650
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	2.6	0.9597
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	2.8	0.9639
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	3.5	0.9610
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	3.9	0.9637
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	4.5	0.9522
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	5.2	0.9563
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	5.3	0.9422

Compare expression of checked genes

Lus10001170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.