Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05230 280 / 1e-87 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 280 / 1e-87 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 176 / 7e-49 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 147 / 4e-39 Domain of unknown function (DUF3444) (.1) AT3G07760 130 / 1e-36 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT5G37440 134 / 4e-36 Chaperone DnaJ-domain superfamily protein (.1) AT5G37750 132 / 7e-36 Chaperone DnaJ-domain superfamily protein (.1) AT3G04980 139 / 1e-35 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 137 / 4e-35 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 132 / 3e-34 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001744 [exp] 566 / 0 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 367 / 5e-120 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 340 / 7e-110 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10001743 [exp] 180 / 5e-56 AT3G07760 154 / 7e-50 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10008983 [exp] 191 / 2e-54 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 191 / 3e-54 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 186 / 1e-52 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 183 / 1e-51 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 124 / 2e-30 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165600 [exp] 425 / 7e-144 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 411 / 3e-138 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 196 / 8e-56 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 187 / 9e-53 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 180 / 5e-50 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 177 / 4e-49 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 177 / 7e-49 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 172 / 3e-47 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165300 [exp] 144 / 4e-42 AT3G07760 229 / 3e-79 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.008G196201 [exp] 140 / 6e-38 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF07647 [flax] [poplar] SAM_2 SAM domain (Sterile alpha motif) CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10001171 pacid=23155034 polypeptide=Lus10001171 locus=Lus10001171.g ID=Lus10001171.BGIv1.0 annot-version=v1.0 ATGGAAGCAAATATAGCGGAGGCTATTAGAGCCAAGGAGATCGCGGAGAGGAGATTTGCGGAGAAGGATTTCGTCAGCGCCAAGAGTTACGCTTTGAAGG CTAAATCTCTGTGCCCTGGACTGGAAGGCGTGTCTCAGATGGTATCCACTTTCGAAGTTTACATGGCATCTGAGGTCCGGAGCAACGGCCAAATTGATTA TTATTCAGTACTTGGGTTGAAGCCCACTGCAGACAGAGACGCTGTTAAGAAGCAGTACAGGAAGATGGCTGTGGTGCTTCATCCTGATAAGAACAAAACA GTTGGAGCTGATGGTGCTTTTAAACTTGTATCCGAAGCGTGGACCATGTTATCGGATAGTCTGAAGAGGAGTTCATATGATATAAACAAGCAATATGCTC CTGGCGTTGTTGGCCAGACAAATTCGTCGTCAATGCATGCTTCTGGTGGCGCTGGTTACACCAACTGCTCCAGTTCATCTGCTCCCCACGGGCTTGATAC TTTCTGGACTGTTTGCACCTCTTGTAAAGTTCAATATGAGTATTTGAGGAAGTACGCGAACAAGCGACTTTCGTGCAAGAACTGCAGAGGTACTTTCATT GCTGTGGAAACAGGGGCAGGTCCAGCAACCGGATCTTTTCCGTATAGTTCGTGGTCTTGTGTGCACGGCAATGGTTATGGAAGCCATGGATACGATGGCG TTTCGTATGTCCCTACTAATACTATGTTGTACACAGGAAATGGAGTCTCAGGATTACACCCTGCTCATGGGTACGAGTATGCTGCCAATAATGTATCATT TCAGTGGGGATCTTACTCTGGAACTTCTGGTGTCTTAGCTCCTAATGGAACAACTACCGATACTCTTTATCAGAATAATGGAAAAGTCAGTCGCGGGAGG AAGGTTAAACCAGTCTCTAAGGAGAAGCCTTCTCCAAAACCTGCTGTATCTAACGATGTTGGTTTGTGGTTGGAAGAAATAAACCTGGGTAGCTACCGTC AGATTTTCAAAGAAAATGGTGTTAATGGAGAATATCTTGAGGGCATGTCCATGTTCACAACCGAACAGATACTAAGGTTTATAAGGCGGTGCCACATGAA ATGGGGCGACTTCATTACGCTGTGCAAGGAGCTCAGAAGAATCAAAGGTTTGTCCCATGTTCACTCTACATCTCCCCTCACTCTTCTCTTTGCCTATGGA TCGCAAATTTGGTTGTGA
AA sequence Show only first row Show all	>Lus10001171 pacid=23155034 polypeptide=Lus10001171 locus=Lus10001171.g ID=Lus10001171.BGIv1.0 annot-version=v1.0 MEANIAEAIRAKEIAERRFAEKDFVSAKSYALKAKSLCPGLEGVSQMVSTFEVYMASEVRSNGQIDYYSVLGLKPTADRDAVKKQYRKMAVVLHPDKNKT VGADGAFKLVSEAWTMLSDSLKRSSYDINKQYAPGVVGQTNSSSMHASGGAGYTNCSSSSAPHGLDTFWTVCTSCKVQYEYLRKYANKRLSCKNCRGTFI AVETGAGPATGSFPYSSWSCVHGNGYGSHGYDGVSYVPTNTMLYTGNGVSGLHPAHGYEYAANNVSFQWGSYSGTSGVLAPNGTTTDTLYQNNGKVSRGR KVKPVSKEKPSPKPAVSNDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKGLSHVHSTSPLTLLFAYG SQIWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	0	1
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	1.0	0.8904
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	7.2	0.8003
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	8.7	0.7982
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	9.2	0.7982
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10027113 [exp]	9.5	0.7744
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	9.8	0.7349
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	9.9	0.7858
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	10.5	0.7607
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	11.6	0.7363
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	12.4	0.7880

Compare expression of checked genes

Lus10001171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.