Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48170 145 / 5e-45 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1) AT4G24210 59 / 1e-11 SLY1 SLEEPY1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006381 [exp] 154 / 4e-48 AT5G48170 140 / 5e-43 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10012335 [exp] 137 / 2e-41 AT5G48170 145 / 6e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10042637 [exp] 59 / 3e-11 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1) Lus10003731 [exp] 39 / 0.001 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10001745 [exp] 0 / 1 AT5G48170 114 / 1e-32 SNEEZY, SLEEPY2, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165700 [exp] 171 / 3e-55 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.014G022100 [exp] 58 / 9e-11 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.002G122300 [exp] 57 / 1e-10 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.002G054500 [exp] 45 / 7e-06 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.014G098300 [exp] 43 / 3e-05 AT5G36000 369 / 5e-128 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10001172 pacid=23155057 polypeptide=Lus10001172 locus=Lus10001172.g ID=Lus10001172.BGIv1.0 annot-version=v1.0 ATGCTGCCGGCAATAAACACCTACATCCCCAACGTCGAGGTCGATGCTCCTGTAGCTGGAATATTCAGCATCAACGACCACGTGGACATACTCACGGAGG TCCTGAAGCGGCTAGATGGCCGCTCCCTATGCGTCGCCGCTTCCGTCTGCCGTCTATGGAACAACATCGCCACCAACGACGCCGTTTGGGAGGAGCTCTG CTTCCGCCACGTGTCTCCTCGGCCTCCTTCCGGGGTGAGGCCCGTGGTGATGGCACTCGGCGGCTACAAGCGCCTCTACATGGTGTGTGTCCGTCCGGTG CTGAGTCGACTCGGCCGAGGCGGGAAGCGAATATCGGGGTCGGGTGAGCAAGCCAGGCCTCGGGTTTGGACCCCCGACGAAGTCCAGCTGTCGTTGTCGC TGTTCTGCGTTGAGTACTACGAAAGGCTCGGCGATAGAGTCGGCGGGAGCGACGCGTCAGCACCGTCGTCGCTCATGTTCTTGTGCAAGCCCGTCAACGT TTGA
AA sequence Show only first row Show all	>Lus10001172 pacid=23155057 polypeptide=Lus10001172 locus=Lus10001172.g ID=Lus10001172.BGIv1.0 annot-version=v1.0 MLPAINTYIPNVEVDAPVAGIFSINDHVDILTEVLKRLDGRSLCVAASVCRLWNNIATNDAVWEELCFRHVSPRPPSGVRPVVMALGGYKRLYMVCVRPV LSRLGRGGKRISGSGEQARPRVWTPDEVQLSLSLFCVEYYERLGDRVGGSDASAPSSLMFLCKPVNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	0	1
					Lus10011220 [exp]	2.0	0.9479
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	3.9	0.9386
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	4.2	0.9274
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10012513 [exp]	4.5	0.9119
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	6.9	0.9202
AT3G22810			Plant protein of unknown funct...		Lus10014703 [exp]	8.9	0.9344
AT5G59970			Histone superfamily protein (....		Lus10028464 [exp]	9.5	0.9303
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	10.5	0.9236
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	12.8	0.9414
					Lus10024189 [exp]	14.4	0.9096

Compare expression of checked genes

Lus10001172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.