Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07750 405 / 1e-143 3'-5'-exoribonuclease family protein (.1.2) AT3G12990 96 / 1e-22 RRP45A ribonuclease PH45A (.1.2.3) AT3G60500 93 / 2e-21 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT1G60080 79 / 7e-17 3'-5'-exoribonuclease family protein (.1) AT3G61620 43 / 0.0001 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 42 / 0.0003 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001747 [exp] 480 / 3e-173 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10012336 [exp] 329 / 1e-113 AT3G07750 340 / 6e-118 3'-5'-exoribonuclease family protein (.1.2) Lus10006382 [exp] 329 / 3e-113 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2) Lus10009708 [exp] 91 / 2e-20 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10021789 [exp] 85 / 6e-19 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10034605 [exp] 73 / 2e-14 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10036022 [exp] 72 / 6e-14 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10008763 [exp] 41 / 0.001 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166200 [exp] 431 / 8e-154 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2) Potri.001G253200 [exp] 100 / 1e-23 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.009G047500 [exp] 98 / 5e-23 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.016G055600 [exp] 73 / 1e-14 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 46 / 1e-05 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.001G347900 [exp] 42 / 0.0004 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10001173 pacid=23155040 polypeptide=Lus10001173 locus=Lus10001173.g ID=Lus10001173.BGIv1.0 annot-version=v1.0 ATGGTGGGGCTTTCGGTTGGAGAGCAGCATTTCATTAAAGGAGGCATTGATCAGAACATCCGTTGTGACGGCCGGAAGAGAGACTCTTACCGCCCCATTT TCGTTGAAACTGGCGTCATTCCTCAGGCAAATGGCTCGGCTCGTATCAGGATGGGAGCAACAGAGGTCATTGCTAGCGTAAAGGCAGAGCTAGGAAAGCC AAGTGCTTTGCATCCTGACAAGGGGAAAATTTCCATATTTGTGGATTGCAGTGCTGTTGCAGAACCAACATTCGAGGGAAGAGGAGGTGAGGAATTGGCA GCAGAACTTTCAGTTACTCTTCAACGTTGCCTCTTAGGTGGCACTAGTGGAGCAGGAGCCGGAATCGATCTGACATCATTGATAGTAGCAGAAGGAAAGA TTTGTTGGGATCTTTACATTGACGGCCTTGTCATTAGTTGTGATGGTAATCTACTTGATTCACTAGGTGCCGCCATTAAGGCTGCCTTGGCGAATACTGC CATCCCACGAGTGAACGTCTCAGCTGCTGCAGCTGGAGACGAACAGCCAGAGGTGGACATAAGCGACGAAGAGTTCTTGCAGTTCGATACATCTGCAGTC CCCGTGATAATTACTCTAACAAAGGTAGGGAAGCACTACATTGTGGATGCAACATCAGAAGAGGAATCGCAGATGAACTCAGCTGTTTCTATCTCTGTCA ATAGGAAAGGCCACACCTGTGGGTTAACTAAACGAGGAGGTGCAGGCCTTGATCCGAGTATTATCTCCGATATGGTCTCGGTGGCACAACACTTGGGCGA ACAGCTGATAATCAAACTGGATTCTGAAATTTCAGCTGCTGAGGCTGAAGAAGGCGAATCGTGA
AA sequence Show only first row Show all	>Lus10001173 pacid=23155040 polypeptide=Lus10001173 locus=Lus10001173.g ID=Lus10001173.BGIv1.0 annot-version=v1.0 MVGLSVGEQHFIKGGIDQNIRCDGRKRDSYRPIFVETGVIPQANGSARIRMGATEVIASVKAELGKPSALHPDKGKISIFVDCSAVAEPTFEGRGGEELA AELSVTLQRCLLGGTSGAGAGIDLTSLIVAEGKICWDLYIDGLVISCDGNLLDSLGAAIKAALANTAIPRVNVSAAAAGDEQPEVDISDEEFLQFDTSAV PVIITLTKVGKHYIVDATSEEESQMNSAVSISVNRKGHTCGLTKRGGAGLDPSIISDMVSVAQHLGEQLIIKLDSEISAAEAEEGES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001173 [exp]	0	1
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	2.2	0.9053
AT5G38720			unknown protein		Lus10023232 [exp]	4.9	0.8842
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	5.3	0.8772
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	7.1	0.8725
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10023781 [exp]	7.5	0.8649
AT2G35736			unknown protein		Lus10028935 [exp]	9.8	0.8569
AT1G76860			Small nuclear ribonucleoprotei...		Lus10042341 [exp]	13.2	0.8231
AT5G59850			Ribosomal protein S8 family pr...		Lus10029461 [exp]	15.3	0.8789
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	16.5	0.8202
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	17.7	0.8709

Compare expression of checked genes

Lus10001173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.