Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05320 542 / 0 beta-1,2-N-acetylglucosaminyltransferase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001748 [exp] 694 / 0 AT2G05320 601 / 0.0 beta-1,2-N-acetylglucosaminyltransferase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G167200 [exp] 579 / 0 AT2G05320 547 / 0.0 beta-1,2-N-acetylglucosaminyltransferase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05060 [flax] [poplar] MGAT2 N-acetylglucosaminyltransferase II (MGAT2)
Representative CDS sequence Show only first row Show all	>Lus10001174 pacid=23155050 polypeptide=Lus10001174 locus=Lus10001174.g ID=Lus10001174.BGIv1.0 annot-version=v1.0 ATGGCTATTTACGGCAAGACATCCCGTCTTAAAGTAGGAGCTTTTCTCAAGCTGCCTAAGCAGAGCAAGTTGTCCATCCTATTGGAAAAGCTTAACCAGT TACCTCCAAGGAACGTGGATCTGTATCCCAAGTTAGTTCAGGATCATGTAGCTATAGTCTTGTATGTTCATAACAGGCCTCAGTATCTGAAAGTCGTGGT CGATAGCTTGTCGAAGGTGGTTGGGATAAACGAGACATTGCTCATTGTCAGCCATGATGGCTACTTTAAGGAGATGAACAAGATTGTGGCAAGTATCAAG TTTTGTAGGGTGAAACAGATATTTGCACCTTATTCGCCTCATGTTTTCGACTCTAGCTTCCCTGGTGTTTCTTCCAATGACTGTAGGGAGAAGGAGAATG CTGCTAAGAAGGATTGTGTAGGGAATCCGGATCAGTATGGGAATCACAGGTCACCGAAGATTGTTTCATTGAAGCATCATTGGTGGTGGATGATGAATAC GGTGTGGGATGGACTGCAGGAGACGAAGAGGCACCATGGCCACATTCTCTTCATCGAGGAGGATCACTTCATTTTCCCTAATGCATACCGCAACTTGAAA GTGCTCACAGATTTGAAGCCTGTAAAGTGCCCTGATTGCTTTGCCGCAAACTTAGCACCTTCTGATGTCAACTCCAGAGGAGAGAATTTGGACAGTTTAC TTGCTGAGCGGATGGGAAATGTTGGTTACTCATTCAACAGAACCGTCTGGGAAATGATTCATCTAAAAGCAAGAGAGTTCTGTTTCTTTGATGATTACAA CTGGGATATAACAATGTGGGCAACTGTTTACCCTTCCTTTGGACGTCCTGTCTACTCCTTACGAGGGCCAAGGACGAGTGCTGTTCATTTTGGTAAGTGT GGTTTGCATCAGGGAAACGGGGAAAAAACTGCTTGCATAGACAGTGGCGCTGTGAATATCGGGGTAAGCGAAGCTGATATGGCAGTCAACATAAACAAGG AGTGGGAAGTGCGTGTATACGAGAATCAGCCAGGGTATAAGGCTGGGTTCAAAGGTTGGGGAGGATGGGGGGACGACAGAGATCGTGAATTGTGCATGAA ATTCGCTGAAATGCATCGGATTGGCAGCACCTCGATTTGA
AA sequence Show only first row Show all	>Lus10001174 pacid=23155050 polypeptide=Lus10001174 locus=Lus10001174.g ID=Lus10001174.BGIv1.0 annot-version=v1.0 MAIYGKTSRLKVGAFLKLPKQSKLSILLEKLNQLPPRNVDLYPKLVQDHVAIVLYVHNRPQYLKVVVDSLSKVVGINETLLIVSHDGYFKEMNKIVASIK FCRVKQIFAPYSPHVFDSSFPGVSSNDCREKENAAKKDCVGNPDQYGNHRSPKIVSLKHHWWWMMNTVWDGLQETKRHHGHILFIEEDHFIFPNAYRNLK VLTDLKPVKCPDCFAANLAPSDVNSRGENLDSLLAERMGNVGYSFNRTVWEMIHLKAREFCFFDDYNWDITMWATVYPSFGRPVYSLRGPRTSAVHFGKC GLHQGNGEKTACIDSGAVNIGVSEADMAVNINKEWEVRVYENQPGYKAGFKGWGGWGDDRDRELCMKFAEMHRIGSTSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	0	1
AT3G06145			unknown protein		Lus10034029 [exp]	2.0	0.8705
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10033016 [exp]	3.0	0.8760
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001748 [exp]	3.3	0.8315
AT3G25130			unknown protein		Lus10022768 [exp]	5.3	0.8417
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10015077 [exp]	6.3	0.8344
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	6.5	0.8670
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	8.5	0.8546
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10041819 [exp]	9.2	0.8507
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	9.5	0.8134
					Lus10003135 [exp]	10.4	0.8479

Compare expression of checked genes

Lus10001174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.