Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05310 115 / 1e-34 unknown protein AT4G13500 113 / 7e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G167300 [exp] 119 / 3e-36 AT2G05310 148 / 2e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001175 pacid=23155052 polypeptide=Lus10001175 locus=Lus10001175.g ID=Lus10001175.BGIv1.0 annot-version=v1.0 ATGGGCAGCTCACCAGTTCAGAGTCCATGCCACCTCAGGTGCCCCCCTTTCACTAGTACAGGAGGAGGAGATGGAGAGCTGAAGCCAAAAGATAAGAAGA AGTTCATAACCAAAGACCAGGAGCCAGAACAGTACTGGCAAACAGCAGGAGAAAGGGAAGGAGAGAACCCAATGATGACACCTCTTCCTTACATAATCAT ATTTGGAATGTCCACTCCTTTTGTCATCCTTGCCATTGGTTTTGCTAATGGCTGGATTAAGGTACCTATCAGATGA
AA sequence Show only first row Show all	>Lus10001175 pacid=23155052 polypeptide=Lus10001175 locus=Lus10001175.g ID=Lus10001175.BGIv1.0 annot-version=v1.0 MGSSPVQSPCHLRCPPFTSTGGGDGELKPKDKKKFITKDQEPEQYWQTAGEREGENPMMTPLPYIIIFGMSTPFVILAIGFANGWIKVPIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05310			unknown protein		Lus10001175 [exp]	0	1
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	2.8	0.9492
AT5G27290			unknown protein		Lus10018966 [exp]	2.8	0.9479
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	3.5	0.9331
AT1G64150			Uncharacterized protein family...		Lus10032330 [exp]	4.2	0.9247
AT5G27290			unknown protein		Lus10033822 [exp]	4.6	0.9469
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	5.5	0.9305
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	6.2	0.9149
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042758 [exp]	9.5	0.9158
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	9.6	0.8966
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	10.0	0.9231

Compare expression of checked genes

Lus10001175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.