Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12730 391 / 3e-134 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 344 / 2e-115 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT2G45470 257 / 1e-81 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 247 / 1e-77 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G12660 124 / 1e-32 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 115 / 3e-29 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT4G31370 112 / 6e-28 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT3G46550 108 / 6e-26 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT5G03170 76 / 1e-15 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 76 / 3e-15 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012344 [exp] 517 / 0 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 514 / 0 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 496 / 3e-176 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 369 / 4e-125 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 364 / 1e-123 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10009235 [exp] 250 / 5e-79 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 169 / 4e-50 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10040821 [exp] 119 / 3e-29 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 109 / 6e-26 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168100 [exp] 451 / 1e-157 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 364 / 2e-123 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 360 / 9e-122 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G071700 [exp] 256 / 4e-81 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G037800 [exp] 135 / 4e-36 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G097000 [exp] 123 / 4e-31 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G005100 [exp] 117 / 4e-30 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G174900 [exp] 119 / 1e-29 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G276200 [exp] 116 / 3e-29 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G129200 [exp] 74 / 1e-14 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10001178 pacid=23155055 polypeptide=Lus10001178 locus=Lus10001178.g ID=Lus10001178.BGIv1.0 annot-version=v1.0 ATGGTTCTGAGGGCCGCCACCACAATGGCACAACCGCTGCGTCCCTCCGCCGTCGCCTTTTCTTTCCTACTCCTTATAAGTCTCCTCATCAATATCTCTA CCACCGTGGTCTCTGGCCACAACATAACCCGCATCCTAGCAAAACACCCACAGTTCTCAACCTTCAACCACTACCTCACCGTCACCCACATAGCCGCCGA GATCAACCGTCGTCAGACCATCACCGTGCTCGCCCTTGACAACGACGCAATGTCCTCCTTAGTCGACAAGCACCTCTCAGAGTCGACGCTGAGGAACGTG CTGTCCCTCCACGTGCTTGTCGACTACTACGGGACTAAGAAGCTTCACCAGATAACAGGCGGATCCACCTTGACCTCCACCATGTTTCAGGCTACCGGAG CAGCACCGGGGACTTCGGGTTTCTTGAACATCACGGATCTCAAAGGAGGGAAAGTGGCGTTTGGACCTGAGGAGAATAATGATGGCAAGATGGATGCTCT TTTTGTTAAGTCCGTGGTTGAAATGCCTTACAACATCTCCATCTTGCAAATCAGCCAGGCCGTAAACTCAGTGGAAGCAGAGGCGCCAGCATCAGCACCA TCACTAAACCTGACAGCAATCCTCCGGAAGCAAGGCTGCACCAAATACACCGACTTACTATCCTCCACGGGAGCAGTCACCACGTTTGAAGCTAACGTTG ACGGAGGCCTAACCGTGTTCTGCCCATCAGACGCCGTCATAACATCCTTCGCCCCCAAGTATAATAACCTAACTGACTCCCAAAAGCTGTCCCTCGTTCT CTACCATGGCATCCCAGTGTTCATGCCCATGCAGATGATGAAGTCCAACAACGGCGTGGTCAACACCCTCGCCACCGACGGGGCTAGCAAGTACGACATC ACTGTCCAGGACGATGGCGAGATCGTGAAGCTCAAGACCAAAGTGGTGACGGCCACCATAATGGGGACGCTCAAGGAGCAAGACCCGTTGATCGTGTATA AGGTGGATAAAGTGCTGCAGCCCAAGGAGTTATTTAAGGCTGGCGTGGATAATGATGATGATGTGGCTCCAGCTCCAGCTCCAAAAGGGGCGGCTAAGAA GAAGGGGAAGAAGGGGAAGTTGGTAGCTGCGGATGGGCCGGATGCAGCTGATTCCCCTGAGGGGGATTCGGATGACTCTACAGCTGCAGATGAGGATGCC AATGGAGCTGTTGGGATCAACGGTGGCAGATCAATAGCACTGTTTATGGGTTTGAGTATGGGGATGGTGATGTTGCTTTGA
AA sequence Show only first row Show all	>Lus10001178 pacid=23155055 polypeptide=Lus10001178 locus=Lus10001178.g ID=Lus10001178.BGIv1.0 annot-version=v1.0 MVLRAATTMAQPLRPSAVAFSFLLLISLLINISTTVVSGHNITRILAKHPQFSTFNHYLTVTHIAAEINRRQTITVLALDNDAMSSLVDKHLSESTLRNV LSLHVLVDYYGTKKLHQITGGSTLTSTMFQATGAAPGTSGFLNITDLKGGKVAFGPEENNDGKMDALFVKSVVEMPYNISILQISQAVNSVEAEAPASAP SLNLTAILRKQGCTKYTDLLSSTGAVTTFEANVDGGLTVFCPSDAVITSFAPKYNNLTDSQKLSLVLYHGIPVFMPMQMMKSNNGVVNTLATDGASKYDI TVQDDGEIVKLKTKVVTATIMGTLKEQDPLIVYKVDKVLQPKELFKAGVDNDDDVAPAPAPKGAAKKKGKKGKLVAADGPDAADSPEGDSDDSTAADEDA NGAVGINGGRSIALFMGLSMGMVMLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	1.7	0.9736
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	2.4	0.9736
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	2.4	0.9624
					Lus10038634 [exp]	2.6	0.9591
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	3.0	0.9702
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	3.9	0.9641
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	4.4	0.9445
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	4.5	0.9674
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	6.0	0.9560
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10020875 [exp]	7.9	0.9285

Compare expression of checked genes

Lus10001178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.