Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48220 483 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3) AT2G04400 436 / 3e-152 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006354 [exp] 514 / 0 AT2G04400 540 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10012310 [exp] 504 / 2e-179 AT2G04400 537 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10001753 [exp] 133 / 1e-34 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169100 [exp] 501 / 4e-178 AT5G48220 516 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00218 [flax] [poplar] IGPS Indole-3-glycerol phosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10001179 pacid=23155047 polypeptide=Lus10001179 locus=Lus10001179.g ID=Lus10001179.BGIv1.0 annot-version=v1.0 ATGGAGGGACTCGTTTCGCTGAAATCCACTCCTGGAGCTTCCACCCGGTCTGCTTCCTCAGCCTTGAATCTTCGCCGCCGATCCAGTTTCTCAATTGGCC GATCTCTGGTTACTCTGCCCCGAAGTGAAGGCTCCTTCACCACCACCATTCGAGCTCAACAGCCTGAGACAGCCGCAGAAGAGCCAGAGACTGTTGTTGT CAAGGCTAAGGAGGAGTCCTCGAAAGTATGGATGCTTCAAGATCAGTTGGTTGCCAGCCAAGGGATTAAAGTAAGGAGGCAACCCTCCACTGGCCCGCCA CTGCATTATGTTGGACCTTTTGAGTTCAGGATTCAGAATGAAGGCAATACTCCTAGGAACATCCTCGAGGAGATTGTCTGGCACAAGAACACTGAAGTCT CTCAAATGAAAGAGAAGAAGCCTCTCTATAGGCTGAAGAAAGCTATGGAGAATGCCTATCCCAAGAGAGATTTCATTGCTGCTCTAAAAGAAGCTAATCT TCGCACTGGCCTTCCTGGTTTGATCGCGGAAGTGAAGAAGGCTTCTCCTAGCAGAGGAGTTCTTCGAGAGAATTTCGACCCTGTCGAAGTAGCTCTATCT TATGAGAAAGGTGGAGCTGCATGTCTCAGTGTATTGACAGACGCAAAATTCTTTCAGGGGAGTTTTGAAAACTTGGAGGCTATAAGGAAAGCTGGAGTTA AGTGTCCGCTATTGTGTAAAGAATTTATCATAGATGCGTGGCAGATCTATTATGCCAGAGTTAAAGGAGCAGATGCCGTTCTTCTAATAGCTGCAATTTT GCCTGATCTTGACATTAAATACTTGATTAAGGTTTGCAAGATCCTTGGTTTGACTGCACTTGTTGAGGTGCATGACGAGAGGGAGATGGATCGTGTTCTT GAAATTGAGGGTGTTGAGCTTGTTGGGATTAACAACCGTAATCTTGAAACGTTTGAGGTGGATATCAGTATCACAAAGAAGCTTGTTGAAGGAGAGCGAG GCAAACTCATCCAAGGGAAAGGAATAACTGTGGTCAGTGAGTCTGGGCTATTCACCCCTGAACATATTGCTTATGTTCAAGAAGCAGGAGTCCAAGCGGT CTTAGTCGGAGAATCACTGGTGAAACAAAGTGATCCAGGACAAGGAATATCCGGTCTCTTTGGTAAACATATCGCATAA
AA sequence Show only first row Show all	>Lus10001179 pacid=23155047 polypeptide=Lus10001179 locus=Lus10001179.g ID=Lus10001179.BGIv1.0 annot-version=v1.0 MEGLVSLKSTPGASTRSASSALNLRRRSSFSIGRSLVTLPRSEGSFTTTIRAQQPETAAEEPETVVVKAKEESSKVWMLQDQLVASQGIKVRRQPSTGPP LHYVGPFEFRIQNEGNTPRNILEEIVWHKNTEVSQMKEKKPLYRLKKAMENAYPKRDFIAALKEANLRTGLPGLIAEVKKASPSRGVLRENFDPVEVALS YEKGGAACLSVLTDAKFFQGSFENLEAIRKAGVKCPLLCKEFIIDAWQIYYARVKGADAVLLIAAILPDLDIKYLIKVCKILGLTALVEVHDEREMDRVL EIEGVELVGINNRNLETFEVDISITKKLVEGERGKLIQGKGITVVSESGLFTPEHIAYVQEAGVQAVLVGESLVKQSDPGQGISGLFGKHIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48220			Aldolase-type TIM barrel famil...		Lus10001179 [exp]	0	1
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10041260 [exp]	2.0	0.8608
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10015399 [exp]	7.1	0.8695
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	7.1	0.8314
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	17.7	0.8390
AT5G19540			unknown protein		Lus10034912 [exp]	18.8	0.8410
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	19.1	0.8097
AT2G41150			unknown protein		Lus10023250 [exp]	19.9	0.8271
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10013978 [exp]	20.2	0.8506
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	24.9	0.8111
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	25.2	0.8545

Compare expression of checked genes

Lus10001179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.