Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07570 326 / 8e-110 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 174 / 2e-50 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G47530 108 / 2e-26 Auxin-responsive family protein (.1) AT5G35735 104 / 7e-25 Auxin-responsive family protein (.1) AT4G17280 102 / 7e-24 Auxin-responsive family protein (.1) AT3G25290 101 / 8e-24 Auxin-responsive family protein (.1.2) AT4G12980 91 / 6e-20 Auxin-responsive family protein (.1) AT3G59070 87 / 1e-18 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G54830 77 / 3e-15 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) AT2G04850 73 / 4e-14 Auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016080 [exp] 473 / 2e-167 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012305 [exp] 199 / 1e-61 AT3G07570 165 / 8e-49 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012625 [exp] 182 / 3e-53 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10010120 [exp] 164 / 2e-47 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012304 [exp] 135 / 3e-39 ND 103 / 7e-28 Lus10012350 [exp] 112 / 2e-27 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10001734 [exp] 107 / 8e-26 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10006398 [exp] 105 / 8e-26 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10002274 [exp] 106 / 2e-25 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197500 [exp] 374 / 1e-128 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G098700 [exp] 192 / 3e-57 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.006G015000 [exp] 109 / 2e-26 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 105 / 3e-25 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 104 / 8e-25 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 102 / 3e-24 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 102 / 3e-24 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 102 / 3e-24 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 102 / 4e-24 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 102 / 5e-24 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0559 [flax] [poplar] CBD9-like PF03351 [flax] [poplar] DOMON DOMON domain CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10001180 pacid=23155038 polypeptide=Lus10001180 locus=Lus10001180.g ID=Lus10001180.BGIv1.0 annot-version=v1.0 ATGGAGGTTAGTCATTCCATTTCATCAATCTTGGTAACCATTTCCATACTACTCCTATCATCATCAATTGTCCTCGTCATCTCACAATCACAAACCAACG CGGACTCCTGCACATCAAACCCAGCCCTGCTCGGCCTCTCTGGCTTGCCCTTCCACCCATCCTCCCTCAGCCAATGCCTCTCCGCCTGGGCACCCCGCAG CTACATCCTCAGATACTCGCAAGCATCGTCCAACGTGTGGAACTTCCTGCTATCGGCACCAGACGTGGATTCGTACGTGGCGGTTGGATTCTCCACCGAC GGCCAGATGGTGGGGTCTAGCGCGGTGGTGGGATGGATTGGAAGCGGAGCCGCGGGGCAGGTTAAGCAGTACTATCTAGGCGGGCAGACTCCGGGGCAGG TGGTTCCTGACCAAGGTAACTTGATGATTGGGTCGTCGGTGATTGTGTCTCAGCAGTCCATGCTGTACATGGCTTTCCAGCTCAACACCACGCAGCCTTC CAACTGGCTGCTCTATTCTCTAGGCCCCGCTGGACGGAAGCCGGCTGCACCCAGCTATGCTTTGACGGAGCACCGGGATAAGGTCTCAACCACCTTGAAT TACGTTACAGGTCAGAGCAACAACGAAGGGAGACCATATACGAGGCTAAGGAGGAGCCATGGAATTGTTAACATGTCGGGATGGGGAGTCCTTACGGTAA TAGGAGCCATCATAGCTCGCTACTTCAAACACATGGATCCCATTTGGTTCTACTGCCATGTTTTGGTTCAATGCTCAGGCTTTGTACTTGGTGTCATTGG TGTCATTGCTGGCTTGGTCTTGGAAGGCAACCTTGGTGCCAATGTCTCTACCCACAAAGTTCTTGGCATCAGCATCCTCGTCTTGGGCTGCCTCCAGGTC ATAGCACTTTTGATTCGGCCAGATAAATCATCAAAATATAGGAGATCTTGGAACTTTTACCATTCCATCGTTGGGAAGATACTGATTGCCATAGCCATTG GCAATGTTTTCTATGGAATCCACCTGGGCGGGGAAGGAAGCGGATGGAAAGGCGGGTATGGAGTTATTCTTGTTGTCATGTTTGTTGTTGCCCTCATCTT AGAGCTAAGGATGCGACTGAAGGATTGA
AA sequence Show only first row Show all	>Lus10001180 pacid=23155038 polypeptide=Lus10001180 locus=Lus10001180.g ID=Lus10001180.BGIv1.0 annot-version=v1.0 MEVSHSISSILVTISILLLSSSIVLVISQSQTNADSCTSNPALLGLSGLPFHPSSLSQCLSAWAPRSYILRYSQASSNVWNFLLSAPDVDSYVAVGFSTD GQMVGSSAVVGWIGSGAAGQVKQYYLGGQTPGQVVPDQGNLMIGSSVIVSQQSMLYMAFQLNTTQPSNWLLYSLGPAGRKPAAPSYALTEHRDKVSTTLN YVTGQSNNEGRPYTRLRRSHGIVNMSGWGVLTVIGAIIARYFKHMDPIWFYCHVLVQCSGFVLGVIGVIAGLVLEGNLGANVSTHKVLGISILVLGCLQV IALLIRPDKSSKYRRSWNFYHSIVGKILIAIAIGNVFYGIHLGGEGSGWKGGYGVILVVMFVVALILELRMRLKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	0	1
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	2.0	0.8797
AT4G21215			unknown protein		Lus10020063 [exp]	5.9	0.8377
AT3G14170			Plant protein of unknown funct...		Lus10008137 [exp]	6.6	0.8497
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	9.4	0.8523
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	14.4	0.8240
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	14.5	0.8230
AT1G07120			unknown protein		Lus10031293 [exp]	16.2	0.8220
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	19.0	0.8436
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10035507 [exp]	19.6	0.7027
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	21.2	0.8505

Compare expression of checked genes

Lus10001180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.