Plant FIBer expression Database

Lus10001181 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12760 221 / 7e-72 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043073
[exp]
0 / 1 ND 54 / 4e-10
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G197700
[exp]
295 / 9e-101 AT4G12760 263 / 2e-88 unknown protein
PFAM info
Representative CDS sequence
>Lus10001181 pacid=23155036 polypeptide=Lus10001181 locus=Lus10001181.g ID=Lus10001181.BGIv1.0 annot-version=v1.0
ATGGAGGAGAACAACCCTAACTTTGCGCCGGCAACCTCCGGAAGGCGATCGGTTAAGGCGAAGTCCCATTTCAATAACTACCCTATCTGGAAGGAGAAGT
GGAGGGAAAGTTGCTGCCAAAGGGTCCGCCAAGACAGGAATCGACTGATATGGAAGATGAGGCTGTCTGGGGCGAAATCGGTGGACAAACAGGATCAAGA
GTCTATCAAATCAGCTCTGCAGGGTATTGTTTCTGATGAACTGAAAAGAATCAGACAACCATCATCAGTGGATGATGATGATGATGGCAACAATAAGAAG
CTATTGAATGCCCAATCTTCTGTTGACGATGATGATATGTTATGGGAGTACCACGGTCTGCATGATACTTATGACGGTGATTGCGAAGAGATATTGTTGG
AGATGCAACGGATCTTCTATGAGGATCTCAAGGAAGAATCAAATATGAAAGAATCAGAACCCTGCGCAGATGCATGGGAAGACGGAGAAGATGAGTACTT
GGCTCGTGCTGTTTATGAGCATATGCAATTGAGCAATGAAGTGGGGAAGAAGGTCTGGTGTCCTGTCTGTATGCAGGGAGAGTTACTGGAGAAGTCAGAA
GTCATACACTGCACTCTTTGTTCACTCCAACTCGATAAATGCAACGAGGTTACTCTGGACAGACTAGACTGTCGACTAGCTGATGTCCATGCAGAACATT
TTGCTCGAGGGTGTAGGCAGAAACCCAAGTTTCGAATACGGACAAGATTTGGATTAACAGCACTGTACATATCATGTCAGGAGTGTAATGTATTTGACGT
TGTTATTTAA
AA sequence
>Lus10001181 pacid=23155036 polypeptide=Lus10001181 locus=Lus10001181.g ID=Lus10001181.BGIv1.0 annot-version=v1.0
MEENNPNFAPATSGRRSVKAKSHFNNYPIWKEKWRESCCQRVRQDRNRLIWKMRLSGAKSVDKQDQESIKSALQGIVSDELKRIRQPSSVDDDDDGNNKK
LLNAQSSVDDDDMLWEYHGLHDTYDGDCEEILLEMQRIFYEDLKEESNMKESEPCADAWEDGEDEYLARAVYEHMQLSNEVGKKVWCPVCMQGELLEKSE
VIHCTLCSLQLDKCNEVTLDRLDCRLADVHAEHFARGCRQKPKFRIRTRFGLTALYISCQECNVFDVVI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G12760 unknown protein Lus10001181
[exp]
0 1
AT3G49640 Aldolase-type TIM barrel famil... Lus10003486
[exp]
2.8 0.9511
AT1G07650 Leucine-rich repeat transmembr... Lus10010950
[exp]
2.8 0.9228
AT1G05410 Protein of unknown function (D... Lus10041201
[exp]
3.7 0.9429
AT5G51410 LUC7 N_terminus domain-contain... Lus10031732
[exp]
6.5 0.9166
AT1G17970 RING/U-box superfamily protein... Lus10034644
[exp]
7.2 0.9049
AT5G62570 Calmodulin binding protein-lik... Lus10043463
[exp]
8.8 0.9187
AT5G07910 Leucine-rich repeat (LRR) fami... Lus10000681
[exp]
11.4 0.9345
AT2G01350 QPT quinolinate phoshoribosyltrans... Lus10018781
[exp]
11.7 0.9126
AT4G33000 SCABP8, ATCBL10... SOS3-LIKE CALCIUM BINDING PROT... Lus10015630
[exp]
11.8 0.9282
AT3G49725 GTP-binding protein, HflX (.1) Lus10018403
[exp]
12.0 0.8981

Lus10001181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.