Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12740 463 / 5e-158 HhH-GPD base excision DNA repair family protein (.1) AT2G31450 56 / 3e-08 ATNTH1 DNA glycosylase superfamily protein (.1.2) AT1G05900 56 / 4e-08 ATNTH2 endonuclease III 2 (.1.2) AT2G36490 47 / 4e-05 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 46 / 7e-05 DML2 demeter-like 2 (.1) AT5G04560 43 / 0.0006 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043074 [exp] 848 / 0 AT4G12740 468 / 7e-161 HhH-GPD base excision DNA repair family protein (.1) Lus10027037 [exp] 57 / 1e-08 AT2G31450 416 / 3e-145 DNA glycosylase superfamily protein (.1.2) Lus10025575 [exp] 57 / 2e-08 AT2G31450 424 / 1e-147 DNA glycosylase superfamily protein (.1.2) Lus10035576 [exp] 47 / 4e-05 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10027713 [exp] 46 / 6e-05 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10023864 [exp] 46 / 9e-05 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G198000 [exp] 584 / 0 AT4G12740 523 / 0.0 HhH-GPD base excision DNA repair family protein (.1) Potri.007G127600 [exp] 59 / 3e-09 AT2G31450 421 / 3e-147 DNA glycosylase superfamily protein (.1.2) Potri.006G116000 [exp] 45 / 0.0002 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.001G150001 [exp] 43 / 0.0006 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 43 / 0.0007 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.010G234400 [exp] 43 / 0.0007 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10001182 pacid=23155042 polypeptide=Lus10001182 locus=Lus10001182.g ID=Lus10001182.BGIv1.0 annot-version=v1.0 ATGCGAATCGCTTTCTGCTGCAAGTCATCCGTACCTCCGACTCCGATTGCTCAGTGCCAGAGCTTCGTCCCCCCATTGCCGGTGACTAAAGAATCAATTT TTGTCAAACCCTGTAACGAAATGGAAGACTCCGTAACCCCAAGTAAAATGCAGGGAGGCGGGAGAAACGGTCGGCCTAAGAGGAATAGCAAACAACTCCC TACTGACAAAGTTGGAGTAGAAGTAGCAGCTGATATCGAAGACCTATTCAGTGAAAAAGAAACCCAGAAAATTAGGGGTTTCATGCTGAAATGGTACGAC GGTAACCAGAGAGAGCTTCCGTGGAGAAGAAGGAAAGAAGACGGTAACCCAACTGAAGAAGGTGGTAATGAGGAGAAAGAGAAGAGGGCTTACGGGGTTT GGGTTTCAGAGGTGATGCTGCAGCAAACCAGAGTTCAGACTGTTATTGATTACTATAATCGGTGGATGGCCAAGTGGCCTACAGTTGAGCTTCTTGCTCA GGCTTCTCTGGAGGAGGTTAACAAGATGTGGGCTGGACTGGGTTACTATAGGCGGGCACGGTTCCTACTGGAGGGAGCCAAGATGATAGTTGATGAGGGA GATGGATTTCCCAGCACAGTTGCTTCCCTGAGAAAGGTTCCAGGAATAGGGAACTACACTGCTGGTGCTATCGCCTCCATAGCATTCCAACAAGTTGTGC CTTTAGTTGATGGGAACGTAATAAGGGTGCTTGCTAGGTTGAAAGCTATCTCTGCAAATCCTAAAGACACAGCAACATGTTTACTTATTACTGAGATGCA AGTTTGGACCAGGAAGCTAGCAGCTCAACTAGTAGATGCTGCTCGTCCTGGGGACTTCAACCAGTCACTCATGGAACTCGGTGCAACTGTATGCACTCCT TTGAATCCAAACTGCTCTTCTTGTCCTGTTTCTGGTCAATGTCGTGCCCTTGTGAGCTCGGGGAAGGATCAGTCGGTAATGGTGACAGATTATCCAGCAA AGGTCGTGAAAGCAAAACAAAGAGAGGAGTATTCTGCTGTGTGTGTTGTGGAGATATTAGGAGGCAAGGTTCCAACTGATAATCTATTTCTTCTTGTGAG GAGGCCAGATGAAGGCTTGCTTGCTGGTCTTTGGGAGTTTCCATCTGTGTTGATGAAGACAGAAGCTGACTTGATAAGGCGGAGAAAAGTCATGGATAGC TCACTGAGGAAATCATTTGGGCTCGATCCGGAAAGGAGTCATTCAGTTATTAGGAGGGAGGATGTTGGAGAATTTGTTCATATTTTCAGTCACATCCGTC TGAAGGTTTACGTTGAGTTGTTAGCTATACAGCTTAAAGGTGAAATATCTGATATAGTCCCTCAGCAAAACATGCAAAACGTAACTTGGAAGTGTGTCGC TGGCAAGGATCTTCCAACCTTGGGATTGACATCTGGCGTGAAGAAGGTAACAAGTAACGAGATTTTTAAAGTAGAGGAAGGCAGGATTGTCTCTCTTTTC GTGGATAGATTTCATGGAATTGGGTTTTGGTGA
AA sequence Show only first row Show all	>Lus10001182 pacid=23155042 polypeptide=Lus10001182 locus=Lus10001182.g ID=Lus10001182.BGIv1.0 annot-version=v1.0 MRIAFCCKSSVPPTPIAQCQSFVPPLPVTKESIFVKPCNEMEDSVTPSKMQGGGRNGRPKRNSKQLPTDKVGVEVAADIEDLFSEKETQKIRGFMLKWYD GNQRELPWRRRKEDGNPTEEGGNEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMAKWPTVELLAQASLEEVNKMWAGLGYYRRARFLLEGAKMIVDEG DGFPSTVASLRKVPGIGNYTAGAIASIAFQQVVPLVDGNVIRVLARLKAISANPKDTATCLLITEMQVWTRKLAAQLVDAARPGDFNQSLMELGATVCTP LNPNCSSCPVSGQCRALVSSGKDQSVMVTDYPAKVVKAKQREEYSAVCVVEILGGKVPTDNLFLLVRRPDEGLLAGLWEFPSVLMKTEADLIRRRKVMDS SLRKSFGLDPERSHSVIRREDVGEFVHIFSHIRLKVYVELLAIQLKGEISDIVPQQNMQNVTWKCVAGKDLPTLGLTSGVKKVTSNEIFKVEEGRIVSLF VDRFHGIGFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12740			HhH-GPD base excision DNA repa...		Lus10001182 [exp]	0	1
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	7.0	0.8814
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	7.7	0.8585
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	8.2	0.8358
AT2G28130			unknown protein		Lus10016147 [exp]	9.0	0.8692
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	9.9	0.8745
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	10.0	0.8669
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	12.0	0.8271
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	19.9	0.8203
AT1G75150			unknown protein		Lus10010814 [exp]	22.4	0.8633
AT4G14310			Transducin/WD40 repeat-like su...		Lus10021166 [exp]	25.5	0.8256

Compare expression of checked genes

Lus10001182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.