Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20870 619 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 562 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 554 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 470 / 1e-162 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 466 / 4e-161 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 463 / 4e-160 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 455 / 6e-157 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 451 / 2e-155 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 443 / 3e-152 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 436 / 2e-149 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043075 [exp] 953 / 0 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 567 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 566 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 503 / 1e-175 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 477 / 2e-165 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 471 / 3e-163 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 468 / 4e-162 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039095 [exp] 447 / 7e-154 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 447 / 2e-153 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216700 [exp] 697 / 0 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 563 / 0 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 562 / 0 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 545 / 0 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 536 / 0 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 506 / 6e-177 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 473 / 7e-164 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 466 / 3e-161 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 461 / 2e-159 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 450 / 4e-155 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10001183 pacid=23155053 polypeptide=Lus10001183 locus=Lus10001183.g ID=Lus10001183.BGIv1.0 annot-version=v1.0 ATGGCCAGTCATGGAAACAAATTGGGTATGATATTTTTGGTGGTGTGGCTGATTAGTGTTGAAGGTGGGAAGATAGCAGCAGCAGCAGCAGGGCTAGCTG CCAACTGGGGTACACAATCCACACACCCATTACCTGGAGACATAGTGGTTAAGCTTTTGAAAGAGAATGGGTTTGATAAGGTGAAATTGTTTGAGGCTGA CCCAGCTGCATTGAAGGCGTTAGGCAACTCTGGTATCCAAGTCATGGTTGGGATACCAAATGACCTACTTGCACCTCTTTCCTCCTCTGTTCAGGCTGCT ATTGATTGGGTCCAGCAGAATGTCTCCAACTACATTTCCAAAGATGGGGTCAATATCAGACATGTAGCCGTGGGGAATGAGCCATTTCTAAAGACGTACA ACGACAGATTCATACAAACAACATTCCCAGCTCTGAAGAACATCCAAGCTGCTCTGATAAAGGCAGGGTTAGGAAGACAAGTAAAAGTCACAGTGCCACT GAACGCAGATGTGTACCAGAGTGACAACAGCCTTCCCTCTGGCGGAAGTTTCAGACCAGACATCCATGACCTGATGATCTCCATTATCAAGTTCCTAAAC GAAAACAATTGTCCCCTCACCTTCAACATTTACCCATTCCTCAGCCTCTACGCCGATCCACACTTCCCCAAGGAGTATGCCTACTTTGATGGCAAAGCTG ATCCGCTTGTGGATGGCTCAATTTCCTACACAAACGTGTTTGATGCCAACTTCGACACCCTCGTTGCTGCTCTTGAGAAGAGTGGGTTCCCTTCCATGCC AGTGATTGTCGGGGAGGTTGGCTGGCCGACTGATGGGGACTCCAATGCCAACATTGAAAATGCTAAGAGGTTCAACCAGGGACTAATCGATCGCATACTA CAAGGTCGTGGCACACCAAGGAGATCCACTCCGCCTGACGTCTACATCTTCTCCTTGATCGATGAAGATCACAAGAGCATTGATCCAGGGAACTTTGAGC GACATTGGGGGGTTTTCAATTACGACGGTACCATCAAGTACCAGCTCAACATGGGGGGTAATGGTGGCAAGGGTTTGGTTCCTGCCAAAGGGGTAAGGTA TCTGAAACGCCAGTGGTGTGTGTTGTCTCCACAAGCCAACGTTGCTGACCCTGCTACTTTGGCTAGCAGCATCAACTACGCTTGCACCTATGCAGATTGT ACCAGTTTGGGAGCTGGATCTTCTTGTGGAACCTTGGATGGTAGCGGCAATGCTTCTTATGCATTTAACACGTATTACCAGACCATGAATCAAAGGAATG GCGCTTGTAACTTCAGCAATGGCCTTTCTCTGGTTACCACCCTTGATCCCACTGTTGGTAAGTGTCGATTCGAGGTCATGATTGATACCGGTAAACATCA ACTACCACCTCCTACACATTCCTCTTCATCAAAACCTGGAAACATTGACTATGTAATCAGTGTAGTGGTAGGCTTCATGGTCATTGTTTACGGAGCAAGC TGA
AA sequence Show only first row Show all	>Lus10001183 pacid=23155053 polypeptide=Lus10001183 locus=Lus10001183.g ID=Lus10001183.BGIv1.0 annot-version=v1.0 MASHGNKLGMIFLVVWLISVEGGKIAAAAAGLAANWGTQSTHPLPGDIVVKLLKENGFDKVKLFEADPAALKALGNSGIQVMVGIPNDLLAPLSSSVQAA IDWVQQNVSNYISKDGVNIRHVAVGNEPFLKTYNDRFIQTTFPALKNIQAALIKAGLGRQVKVTVPLNADVYQSDNSLPSGGSFRPDIHDLMISIIKFLN ENNCPLTFNIYPFLSLYADPHFPKEYAYFDGKADPLVDGSISYTNVFDANFDTLVAALEKSGFPSMPVIVGEVGWPTDGDSNANIENAKRFNQGLIDRIL QGRGTPRRSTPPDVYIFSLIDEDHKSIDPGNFERHWGVFNYDGTIKYQLNMGGNGGKGLVPAKGVRYLKRQWCVLSPQANVADPATLASSINYACTYADC TSLGAGSSCGTLDGSGNASYAFNTYYQTMNQRNGACNFSNGLSLVTTLDPTVGKCRFEVMIDTGKHQLPPPTHSSSSKPGNIDYVISVVVGFMVIVYGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	0	1
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	2.8	0.9080
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	3.5	0.8812
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	3.5	0.8639
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	3.5	0.8903
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	4.5	0.8713
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	4.9	0.8391
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	5.2	0.8548
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	5.3	0.8611
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	7.2	0.8762
AT5G59070			UDP-Glycosyltransferase superf...		Lus10040757 [exp]	7.6	0.7956

Compare expression of checked genes

Lus10001183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.