Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18040 117 / 6e-31 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 99 / 3e-24 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 95 / 9e-23 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT3G48750 50 / 3e-07 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT3G14720 48 / 2e-06 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G73670 48 / 2e-06 ATMPK15 MAP kinase 15 (.1) AT1G67580 48 / 3e-06 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G53510 48 / 3e-06 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT3G18040 47 / 5e-06 ATMPK9 MAP kinase 9 (.1.2) AT2G42880 47 / 6e-06 ATMPK20 MAP kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017371 [exp] 261 / 5e-86 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10040530 [exp] 257 / 1e-84 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10023050 [exp] 52 / 8e-08 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10032422 [exp] 52 / 1e-07 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10038754 [exp] 50 / 3e-07 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10038755 [exp] 48 / 1e-06 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10013702 [exp] 47 / 4e-06 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10003236 [exp] 47 / 5e-06 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 47 / 5e-06 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052100 [exp] 178 / 8e-54 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 171 / 3e-51 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.003G142900 [exp] 51 / 2e-07 AT5G63610 676 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.001G088000 [exp] 51 / 3e-07 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.004G133500 [exp] 50 / 3e-07 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.002G059900 [exp] 49 / 1e-06 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 49 / 1e-06 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.012G048600 [exp] 49 / 2e-06 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.010G056900 [exp] 48 / 3e-06 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G102500 [exp] 47 / 3e-06 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001184 pacid=23155046 polypeptide=Lus10001184 locus=Lus10001184.g ID=Lus10001184.BGIv1.0 annot-version=v1.0 ATGGCTGATAACGATCAGGAGAAGAAAGTGGCCGATAGGTATCTAAAGCGTGAAATTCTTGGCGAAGGCACCTATGGTGTTGTCTACAAGGCCATTGATA CCAGGACTGGACAGACAGTTGCAATTAAGAAAATTCGGCTTGGGAAGCACAAGGGGTGTTTGCTCGATAGTACAGAGCACCTGAACTGTTATTTGGGGCA AAACAGTATGGTGCTGGTGTTGATGTGTGGGCAGCAGCCTGCATATTTGCCGAACTTCTCCTCCACTGACCATATCTGCAGTGAGGATGCACTGGATCTG TTATCAAAGATGTTCACTTATGATCCAAACGCTAGGATTTCAGTCCAACAGGCGTTGGAGCACAGGGACTTTTCTTCTGCCCCTTTATCTACAGAGCCAG TTAAGCTTCCTAGACCAGCTCCAAAGGGGCAATCTCTCAATACTAGGGTTTCAGATCTGAATTCCCAGGATGGTCCAACTGTGTTATCACCTCCAAGGAA AACAAGAAGAGTGATGGCTGAACGCGAAAGCTTTGATGTAACTGCTAACCATCTTGATAAGATTGATGAACATGGGGAAATCTGGCATACAACTGGCGAA ACGTCAGGCAGAAATGACCACTTGCCAATGTCGGTAGATCTTTCAGTCTTTGGAACCGGGCCTGTGAGCAGACCAACGATTAACAGGTAG
AA sequence Show only first row Show all	>Lus10001184 pacid=23155046 polypeptide=Lus10001184 locus=Lus10001184.g ID=Lus10001184.BGIv1.0 annot-version=v1.0 MADNDQEKKVADRYLKREILGEGTYGVVYKAIDTRTGQTVAIKKIRLGKHKGCLLDSTEHLNCYLGQNSMVLVLMCGQQPAYLPNFSSTDHICSEDALDL LSKMFTYDPNARISVQQALEHRDFSSAPLSTEPVKLPRPAPKGQSLNTRVSDLNSQDGPTVLSPPRKTRRVMAERESFDVTANHLDKIDEHGEIWHTTGE TSGRNDHLPMSVDLSVFGTGPVSRPTINR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10001184 [exp]	0	1
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10035965 [exp]	2.4	0.8434
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	8.7	0.8512
AT4G16444			unknown protein		Lus10035992 [exp]	13.2	0.7785
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	13.6	0.8237
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	15.7	0.8435
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	18.5	0.8056
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10017712 [exp]	19.4	0.7957
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	22.8	0.8402
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	25.2	0.7917
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	28.0	0.7528

Compare expression of checked genes

Lus10001184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.