Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17430 56 / 2e-10 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 53 / 2e-09 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 52 / 5e-09 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 51 / 1e-08 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G10510 48 / 2e-07 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT4G37750 47 / 3e-07 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G65510 47 / 5e-07 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G54320 44 / 4e-06 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G72570 43 / 1e-05 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037209 [exp] 66 / 1e-13 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 65 / 2e-13 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 62 / 1e-12 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10002528 [exp] 59 / 2e-12 AT3G46960 69 / 2e-14 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10030792 [exp] 59 / 3e-11 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030671 [exp] 56 / 2e-10 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005253 [exp] 56 / 2e-10 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10031831 [exp] 54 / 1e-09 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 54 / 1e-09 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092800 [exp] 66 / 7e-14 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.017G078600 [exp] 65 / 2e-13 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G205700 [exp] 56 / 3e-10 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G167700 [exp] 56 / 3e-10 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.018G091600 [exp] 55 / 7e-10 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.008G076400 [exp] 52 / 5e-09 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 51 / 2e-08 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 50 / 2e-08 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.008G011900 [exp] 49 / 5e-08 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G064700 [exp] 49 / 6e-08 AT1G72570 350 / 1e-114 Integrase-type DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001185 pacid=23155048 polypeptide=Lus10001185 locus=Lus10001185.g ID=Lus10001185.BGIv1.0 annot-version=v1.0 ATGGCAGTTCCTGATTTATTCCAACAGTATCGTGAGGCTTATGATGACATAGAGGCAGCGTCAAGAGCTTATGATTTAGCTCAAGGCCTGGGAGCTTCAA CTTTTACCAACTTCCAGGTATCAGATTATGAGGAGGTTGAGATCATGAAACATGTAACTAGAGAAGATTACTTCGCTTCCTTTAAGAAGTTATCTCTCAA CATCTATGTCTTGGACGGAAAACCCATGAGGGACCCTCACAATGGACCACATGCAGAATGGTTACGAATGCAGGTTGGTGGTGGTTTCGTAAGATCCGAG CATGCTCAAGTAGATGTATAA
AA sequence Show only first row Show all	>Lus10001185 pacid=23155048 polypeptide=Lus10001185 locus=Lus10001185.g ID=Lus10001185.BGIv1.0 annot-version=v1.0 MAVPDLFQQYREAYDDIEAASRAYDLAQGLGASTFTNFQVSDYEEVEIMKHVTREDYFASFKKLSLNIYVLDGKPMRDPHNGPHAEWLRMQVGGGFVRSE HAQVDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	0	1
AT4G39380			unknown protein		Lus10033530 [exp]	3.3	0.8532
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	3.9	0.8323
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	4.5	0.8448
AT5G47380			Protein of unknown function, D...		Lus10007795 [exp]	6.9	0.8094
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10036085 [exp]	6.9	0.8188
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	7.0	0.8131
AT2G37690			phosphoribosylaminoimidazole c...		Lus10005526 [exp]	13.8	0.7991
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	13.8	0.8099
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	18.4	0.8301
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	19.2	0.8010

Compare expression of checked genes

Lus10001185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.