Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033789 [exp] 155 / 8e-47 ND / Lus10021734 [exp] 139 / 1e-41 ND / Lus10015774 [exp] 138 / 4e-40 ND / Lus10033146 [exp] 133 / 2e-38 ND / Lus10035030 [exp] 124 / 5e-36 ND / Lus10011072 [exp] 115 / 5e-32 ND / Lus10009869 [exp] 114 / 2e-31 ND / Lus10010841 [exp] 118 / 5e-30 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10007182 [exp] 96 / 7e-25 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001186 pacid=23170264 polypeptide=Lus10001186 locus=Lus10001186.g ID=Lus10001186.BGIv1.0 annot-version=v1.0 ATGGATGTGGGGTGGTTGACACCGAGGGTGATGGGTGGTATTTGCATTAATGAATGTGGTGGTGTTGGTAGTGTCGCCATGGTTGAGGCTGTTGATGTTG GCCCAAAGGATCCAACCAGCGTTTCTTGGGGGTGGGTCCAACTTCTTCTAGGTTGGTGGAAGTCATTGGCATCCTCTTGGAGTAGAAATCCACACGGGAT TCAAAGGGATCGAGGCGCTCTGGGTGCTGCTTGTGCTGTCATAGTTGGGACACACCTTGCACCTAGGGTTGGGTTTATTGTTTGCTGGCTGGAAGAGCTC TTGAAAGATGATCTAGGGTGCGGGTTTATGATGGCCTTCCAAGCGGTGGGTGTGACTGGTGTCCTTGTGTTTGGTGTTGGTTACATTGGCGAGGATGGGG TTCTTGGGTGTTTCCACCTCTTCTCCTCTTCTCTATGCCTTGCCCAGCGGATCCAGTGGGAAGACCTCTTCAAAAAAACTCACAAGCCGGTTCGAAAGAA GAAGAAGTTCCTCAATGATGCTACAAAGAAGATGTATAAACAAGTGGAAAGGAGTATCAATGATCCAGCGATTGGTATATCTCAGATTGGTCTGAATGAT GTTGTGGGGAGATGCTATAAAGTAAAAGAGAAGCCAGGGAGAGTGTTCCATATAGGATTTTCCAAGAACCCTTCGGTGGTGTTTGGTTCGAGTTCAAGGA ACACACAAAATCCTTTCCCTCCTAGAGTTCAAGTCGAGGACTCGATCATGCGACAGTTTGCAAAACTTATGCTTTCAGAGTTTCAAATGAAAACTGGTAC TCTCTCCCCCGAGTTGCAGTTGATGGCTTGA
AA sequence Show only first row Show all	>Lus10001186 pacid=23170264 polypeptide=Lus10001186 locus=Lus10001186.g ID=Lus10001186.BGIv1.0 annot-version=v1.0 MDVGWLTPRVMGGICINECGGVGSVAMVEAVDVGPKDPTSVSWGWVQLLLGWWKSLASSWSRNPHGIQRDRGALGAACAVIVGTHLAPRVGFIVCWLEEL LKDDLGCGFMMAFQAVGVTGVLVFGVGYIGEDGVLGCFHLFSSSLCLAQRIQWEDLFKKTHKPVRKKKKFLNDATKKMYKQVERSINDPAIGISQIGLND VVGRCYKVKEKPGRVFHIGFSKNPSVVFGSSSRNTQNPFPPRVQVEDSIMRQFAKLMLSEFQMKTGTLSPELQLMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001186 [exp]	0	1
					Lus10000984 [exp]	3.3	0.9935
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	4.7	0.9935
					Lus10005225 [exp]	5.0	0.7897
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	5.7	0.9935
					Lus10017835 [exp]	6.6	0.9935
					Lus10040014 [exp]	7.4	0.9935
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10026025 [exp]	7.7	0.8469
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	8.0	0.9166
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	8.1	0.9935
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	8.8	0.9935

Compare expression of checked genes

Lus10001186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.