Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23070 860 / 0 ATCFM3A CRM family member 3A (.1) AT4G14510 808 / 0 ATCFM3B CRM family member 3B (.1) AT4G29750 544 / 1e-175 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G18390 486 / 2e-153 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 478 / 1e-148 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT5G37570 336 / 9e-102 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G16180 334 / 4e-99 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT4G14820 330 / 7e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 331 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 320 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022091 [exp] 1358 / 0 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 531 / 6e-171 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 474 / 4e-149 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 470 / 1e-147 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 456 / 6e-141 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10033576 [exp] 375 / 2e-114 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10022093 [exp] 344 / 7e-110 AT4G14820 141 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028907 [exp] 324 / 5e-97 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 324 / 8e-96 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077100 [exp] 1028 / 0 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 479 / 2e-151 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 470 / 1e-145 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.017G116700 [exp] 392 / 2e-119 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.003G116100 [exp] 347 / 1e-105 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 335 / 3e-101 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G121400 [exp] 332 / 2e-100 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 330 / 2e-99 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 329 / 6e-97 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 324 / 6e-97 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001187 pacid=23170265 polypeptide=Lus10001187 locus=Lus10001187.g ID=Lus10001187.BGIv1.0 annot-version=v1.0 ATGTTTCTTGTGCCCACCGTCTGCTCGACAAAACTACACCAGAGCACCCATCTGCATTTCTTCAGGTACAGCTCGTGCTCCATTTACATAAAGACTCAAA CTTTCTACGTGACTTCGCGCGGTGAAAGTTACCCACTAAACAAAATTGCACTTTCTCCGCAAAATTGTTCCAGTAGTTTGAATTTTTCCACTGGGAGTTG GTTGTCTGAATGGAACAGGCCCAAAAAGGATAGTCGACCAAAGCCCCCCAAGACTATTTCAGCTTATACTAGCGATGAAAATCTCGATGGTCGCATTGTC AGGGGGAGTACAATGAAGAGAATAGTCCAGAAATTGAGGAGACATGGGTATGTTAATGATGAGAATAATAGTGGTAATGAGATGAAGGAGAGAGCTCCAG AGAGAGTGATAGAGAAAGGAAGTTTGAAAGATATATTCCATGTAGAGAAAGGGATGTTACCAAATGCACAAGGTGGGTTCTCAAAGGAATCGCCTCTAGG AATAGAGAGCGTGTTTAAGAATGACGGGGAGATTCGTTTCCCATGGGACAAGCCGAAGAAGGAGGAAGTGGAGAAGGGTAGGTGGACAGCTGAAAAGAAG AGTAGAACCTTTTTTGCAGAGTTGACATTGCCCCAGTCAGAGTTGAGGAGGCTGAGGAACTTAACTCATCAAACAAAGAGTAAGACAAGGATTAAGGGAT CGAGGATTACTCAGGAAATCGTGGACGTCATTCGGGAGAAGTGGACGTCCTCTGAGATTGTGAAGATTAAAGTGGAGGGGACATCTGCTCTTAATATGAG GCGGATGCACGAGATACTAGAGAAAAAGACTGGTGGCATTGTTATTTGGAGGTCTGGCTCTTCTATCTCTTTATACAGGGGTGCGAGCTATGAGGTTCCT GTTGTCAAACAGAGGCGACTATTCAGTAAAACTGAAAGATCCATAAATCACTTGCAACCAGTGGTCAGTAATCGTCTTGCTTTCCCTTCAAATGGTATTG AGAATGAAGTTCAAACACCACTACCAAATTCAGATATTATGGCGGATCATGAAAAGGAGCCAGTCCCAGAAATACCATCAGAAACAAGCTATGAAACTGA GGTAGACAAACTGTTAGATGGTCTGGGTCCCAGATATGCAGAGTGGCCAGGATGTGATCCGGTACCTGTGGATGCGGATATGCTTCCTGCTATAGTTCCT GGATACGAACCTCCCTTTAGGATACTTCCATATGGAGTGAGATCTTCACTTGGACATAAGGAGGCAACTTCCTTACGCCGACTAGCCCGTTTTCTTCCAC CACACTTTGCTCTAGGCAGAACCAGGAACCTTCAGGGGTTGGCAGTGGCCATGATCAAATTATGGAATAAGAGCTCAGTTGCAAAGATAGCTCTCAAGCG TGGCGTACAGCTTACAACCAGTGAAAGAATGGCTGAACATATCAAGAAATTGACAGGGGGGATACTGCTTTCTAGAAACAAAGACTGCCTAGTTTTCTAC AGAGGAAAGAATTTCTTATCACCAGATGTCAGTGAAGCATTGATGGAAAGGGAGATGCTGGCAAAATCTTTACAAGATGAAGAGGAGCAAGCACGTTTAA GAGCGTCAGCCTTTGTTATACTGAGTGATCACAGAACAGAACCGGTAGGAACTGCTGGAACCCTTGAGGAGACTCTGGATGCAAATTCAAGGTGGGGGAC AAGGTTGGATGATCTACACAAGGCAAAAATAATTAAAGAAGCTGAAGTTGTGGGGCATACCAACATCGCAAGGAAGCTTGAAAGGAAGCTCGCATTTGCT GAGAGAAGGCTGATGAAAGCTGAACAAACATTGTCCAAAGTGGAAGAGTATCTGAAACCATCTGACAGACAAGCAGATCCAGAAAGTATTACAGATGAGG AGAGATTTATGTTCCGCAAGCTTGGTTTGAAGATGAAAGCTTTCCTGCTTCTAGGAAGACGTGGGATTTTCGATGGCACAGTGGAGAATATGCACTTACA CTGGAAGTACCGTGAATTAGTGAAGATCATGTTTAAGGCTAAAAGTTTTGATGAGGTTAGAAAGATTGCACTCGGACTAGAAGCTGAGAGCGGGGGTGTC TTAGTCTCTGTTGATAAAGTCTCTAAAGGATATGCTATAATTGTATACCGGGGTAAGGACTACAAACGACCTTCCTCGTTGAGGCCAAAGAACTTATTGA CCAAGAGAAAGGCTCTGGCACGTTCGATTGAGATTCAGAGGCGTGAGGCTCTGCTGAAACATGTTTCAGCTCTGCAAACAAAGGTGGAAACTTTGAGAGC TGAAATGGAACAACTGGGCACTGTAAAAGACCACGGAGATGAACAATTGTACTACAGATTAGATGCCTCTTATCCAACAGATGGTGATGATGAATCGGAT GATAGTGAGGAGGAAGGGGATGAATCCTATCTTGACCTGTATGACAGTGATGGCGAGCTTGATTATGATACTGGAGGTGACGCAAAGGAGAGAATCCATG AGGAGACCAATTTTCCTTACACAATGCAGAATCAATACGAACCTCATTCTAATTCTGGGAGTGAGCAAATCCATGCCCATTTCCTTAAAACCATCTTAAA ACCCCTCCAACCTCAACGTCTTCCCTGTTTCCTCACCACACTACTCCAACTTCCCGGCTGCAATCTCACTTATGCACACCAACTGTTCGATGAAATACCC AGGTGCAGAGACCAGTTTCTCTGGACGTCCTTGATACGTTACCATGTCCGCCACCGTCACTGTAGTGATGCTATTGCTTTCTACTCCAGAATGCATCGGA TTGGAGTGCCGCCCTCTCGCTTCACTTTCTCTTCAGTCCTTAATGCATGTGCTCGAGTCCTGGCTGTCTCAGAAGGGAAGCAAGTACACAACAGACTGCT CCAATCCGGTCATTTGAACAACAAGATTGTGCAAACTACATTGCTGGATATGTATGCAAAATGTGGTTGCCTGGCTGATGCTTCTACCATCTTTGATGGA ATGATTCACAAGGATATTATTGCCTTCACTGCTATTATTTGCGGGTACACCAAATTGAACAGGATGAATGAAGCACAGTGTTTATTTGATACCATGGAGG AGCATAACGTGGTTTCTTGGACTACCATGGTGGCTGGCTATGCAAATTGTGGCAACATGGAAGCAGCCAGAGGGCTATATGATCAGATGCCGGAGAAGAA CTCAGTCACATGGGTTTCCATGATTGCAGGTTATGGCAAGTGTGGTGATGTCAAGGAGGCTAGAAATGTGTTTGATTCCATACTAGATCTGGATGCTTCT TGTTGGGCTGCAATGTTGGCATGTTATGCTCAGAATGGATATGCCAAGGAAGCCATTGAGATGTATATGGAGATGAGAGCAGCAGAAGTCAAAATCACAG ATGTGGCCATGGTTGGAGTCGTCTCTGCTTGTACTCAGCTTGGAGATGTTGAGTTAGCAACCACATTGGCTGCCGACATAGAGGAAAGACACATTGACAG AGGGGTGATTGTATCAAATGCTTTGATCCACATGCAAGCCAAATGCGGTTCGTTGGACTTGGCCTGGAAGGAATTCAACGCAATGAAGTTTAAGGATGTT GTCACTTACAGCACTATGATGGCAGCCTTGGCAGACCATGGCAAGCCTCAGGAAGCTTTGGATTTGTTGAAGAGCATGCAGGATGAAGGTTTGAGACCGA ATCAAGTTACCTTTGTCAGTGTTCTAAATGCTTGCAGCCATGGAGGTTTGGTGGAGGAAGGCTGCAAAAGCTTTGAGTTGATGACTTGTGTGTACAGCAT TAAGCCTTTAGCGGAGCATGTGACTTGTATGGTGGACCTTCTTGGAAGAGCTGGGCAGCTTAGAAGGGCGTACAATCTCATGATGATGAGTAATGCTGAT GATGTGGTGGGTGATGCAGGGATCTGGGGTGCTTTCCATGCAGCATGTAGGGTTCATGGCAATGCAGAAATGGGTGAGATGGCAGCCAGGCATCTTGGGG AAATGGATCCCGAGGATATAGGAAATAAGGTTCTTTTGGCAAATGCTTATGCGGCAAATAGTAAATGGGATTCCGCTGAGAAGGTGAGGAAGACCATGGT AGAGAAAAGAGTGAAAAGAAGCCCTGGCTGCAGCTGGATTTTAGGTTGA
AA sequence Show only first row Show all	>Lus10001187 pacid=23170265 polypeptide=Lus10001187 locus=Lus10001187.g ID=Lus10001187.BGIv1.0 annot-version=v1.0 MFLVPTVCSTKLHQSTHLHFFRYSSCSIYIKTQTFYVTSRGESYPLNKIALSPQNCSSSLNFSTGSWLSEWNRPKKDSRPKPPKTISAYTSDENLDGRIV RGSTMKRIVQKLRRHGYVNDENNSGNEMKERAPERVIEKGSLKDIFHVEKGMLPNAQGGFSKESPLGIESVFKNDGEIRFPWDKPKKEEVEKGRWTAEKK SRTFFAELTLPQSELRRLRNLTHQTKSKTRIKGSRITQEIVDVIREKWTSSEIVKIKVEGTSALNMRRMHEILEKKTGGIVIWRSGSSISLYRGASYEVP VVKQRRLFSKTERSINHLQPVVSNRLAFPSNGIENEVQTPLPNSDIMADHEKEPVPEIPSETSYETEVDKLLDGLGPRYAEWPGCDPVPVDADMLPAIVP GYEPPFRILPYGVRSSLGHKEATSLRRLARFLPPHFALGRTRNLQGLAVAMIKLWNKSSVAKIALKRGVQLTTSERMAEHIKKLTGGILLSRNKDCLVFY RGKNFLSPDVSEALMEREMLAKSLQDEEEQARLRASAFVILSDHRTEPVGTAGTLEETLDANSRWGTRLDDLHKAKIIKEAEVVGHTNIARKLERKLAFA ERRLMKAEQTLSKVEEYLKPSDRQADPESITDEERFMFRKLGLKMKAFLLLGRRGIFDGTVENMHLHWKYRELVKIMFKAKSFDEVRKIALGLEAESGGV LVSVDKVSKGYAIIVYRGKDYKRPSSLRPKNLLTKRKALARSIEIQRREALLKHVSALQTKVETLRAEMEQLGTVKDHGDEQLYYRLDASYPTDGDDESD DSEEEGDESYLDLYDSDGELDYDTGGDAKERIHEETNFPYTMQNQYEPHSNSGSEQIHAHFLKTILKPLQPQRLPCFLTTLLQLPGCNLTYAHQLFDEIP RCRDQFLWTSLIRYHVRHRHCSDAIAFYSRMHRIGVPPSRFTFSSVLNACARVLAVSEGKQVHNRLLQSGHLNNKIVQTTLLDMYAKCGCLADASTIFDG MIHKDIIAFTAIICGYTKLNRMNEAQCLFDTMEEHNVVSWTTMVAGYANCGNMEAARGLYDQMPEKNSVTWVSMIAGYGKCGDVKEARNVFDSILDLDAS CWAAMLACYAQNGYAKEAIEMYMEMRAAEVKITDVAMVGVVSACTQLGDVELATTLAADIEERHIDRGVIVSNALIHMQAKCGSLDLAWKEFNAMKFKDV VTYSTMMAALADHGKPQEALDLLKSMQDEGLRPNQVTFVSVLNACSHGGLVEEGCKSFELMTCVYSIKPLAEHVTCMVDLLGRAGQLRRAYNLMMMSNAD DVVGDAGIWGAFHAACRVHGNAEMGEMAARHLGEMDPEDIGNKVLLANAYAANSKWDSAEKVRKTMVEKRVKRSPGCSWILG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	0	1
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	2.4	0.9489
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	2.8	0.9520
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	3.5	0.9499
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10029195 [exp]	4.0	0.9349
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	4.5	0.9482
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	4.9	0.9401
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	6.3	0.9420
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	7.7	0.9330
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10031930 [exp]	11.0	0.9163
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	11.2	0.9287

Compare expression of checked genes

Lus10001187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.