Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22910 687 / 0 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT4G11920 669 / 0 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G13840 479 / 3e-166 FZR3 FIZZY-related 3 (.1.2) AT4G33270 306 / 5e-99 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 305 / 6e-99 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27570 298 / 1e-96 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G26900 293 / 3e-94 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 291 / 4e-93 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27945 246 / 2e-76 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 72 / 4e-13 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024482 [exp] 884 / 0 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10040282 [exp] 489 / 1e-166 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10023401 [exp] 345 / 2e-114 AT5G13840 546 / 0.0 FIZZY-related 3 (.1.2) Lus10037593 [exp] 312 / 1e-101 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 306 / 5e-99 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 310 / 3e-96 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 281 / 1e-89 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 272 / 1e-86 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10043009 [exp] 272 / 7e-86 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119500 [exp] 767 / 0 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.001G112700 [exp] 745 / 0 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.010G202100 [exp] 504 / 4e-176 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 485 / 1e-168 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.016G118400 [exp] 322 / 3e-105 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 317 / 3e-103 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 313 / 9e-102 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 312 / 1e-101 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 280 / 4e-89 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G060500 [exp] 76 / 3e-14 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001192 pacid=23151485 polypeptide=Lus10001192 locus=Lus10001192.g ID=Lus10001192.BGIv1.0 annot-version=v1.0 ATGGCTACCCGCAAATTGGCATCGCCGGCGCAGTCCTCCTCTTCCTCCCAGCTAAATCTCCCTTCCACAATGCCACGCCCTTCTCTGAATCTCGAAACCC TAACCCCACCCCCTTCCTCCTCTGACCACGTCAAGCGTCTCATTAACTCAAAGCATTACGTCTCTCCTTCCAAGACTATCTACTTCGACAGATTCATCCC TAGCAGATCCGGTTCAAACTTCGAGCTTTTCCATATATCCTCCTCCGCTTCCTCTTCATCTTCGCCGTCTCCGTCTTCTTCTTCCGCGGTGTCCAATTCT AATTCTTCTCCGTCGGTTGCCAACGTCGACGGTGGCAAAGAGGAGAGCCCCAGTGCTTATGCCATTCTTCTTCGGGATGCCCTCTTTGGGACGAATACGC CGGATAAGAGGGATTGCCCTGCACGCAATATTTTCCGGTACAAAACGGAGACTAAGCAGTCAATGCAGTCTCTGTCACCTTTTGTTTTTGATGATGTAGG CCCTGGAGTTAGTCATAGCCCCGTTAAGGCTCCACGAAAGGTGCCCAGATCACCTTATAAGGTGTTAGATGCTCCTGCATTGCAAGATGATTTCTATTTG AACTTAGTGGACTGGTCATCACATAATGTGCTAGCGGTTGGGCTGGGAAACTGTGTATACTTGTGGAATGCTTGCAGTAGCAAGGTGACGAAGCTGTGTG ATTTAGGAATCGATGACAGTGTGTGCTCTGTAGGATGGGCACAACGTGGCACGCACAATCTTGCTGTTGGAACTTTTAATGGGAAAGTCCAGATTTGGGA TGCATCTCGTTGCAAGAAAATAAGAGACATGGAGGGTCATCGACTAAGGGTTGGTGCTCTTGCATGGAGTTCATCGGTCTTGTCCTCTGGTAGCAGGGAC AAGAGTATACTTCAAAGAGATATACGCGCTCCTGAAGACTTTGTTAGCAAACTGTCAGGTCATAAATCTGAGGTCTGTGGTCTAAAGTGGTCCTATGACA ACCGTCAATTAGCATCAGGTGGAAACGACAATAGGCTTTTTGTTTGGAATCAACATTCAACCCAGCCAGTACTGAAATACTGTGAGCATACGGCAGCTGT AAAGGCGATAGCTTGGTCCCCCCATCTTCATGGACTTCTTGCTTCTGGGGGTGGCACTGCTGATCGGTGCATACGGTTCTGGAACACAACCACTAACTCA CATCTTAGCTGCATGGACACCGGTAGTCAGGTGTGCAATCTTGTATGGTCTAAGAATGTGAACGAAATTGTGAGCACCCATGGATACTCCCAAAACCAGA TAATCGTATGGAGGTATCCAACCATGTCAAAGTTGGCTACTCTTACGGGTCATACATACAGAGTACTTTATCTTGCTATCTCGCCGGATGGACAGACAAT CGTGACTGGAGCGGGTGATGAAACACTGAGGTTCTGGAATGTATTCCCATCCCCTAAATCTCAGAACTCTGACAGCGAAATCGGAGCATCTTCGCTAGGA AGAACAACTATTCGGTGA
AA sequence Show only first row Show all	>Lus10001192 pacid=23151485 polypeptide=Lus10001192 locus=Lus10001192.g ID=Lus10001192.BGIv1.0 annot-version=v1.0 MATRKLASPAQSSSSSQLNLPSTMPRPSLNLETLTPPPSSSDHVKRLINSKHYVSPSKTIYFDRFIPSRSGSNFELFHISSSASSSSSPSPSSSSAVSNS NSSPSVANVDGGKEESPSAYAILLRDALFGTNTPDKRDCPARNIFRYKTETKQSMQSLSPFVFDDVGPGVSHSPVKAPRKVPRSPYKVLDAPALQDDFYL NLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHNLAVGTFNGKVQIWDASRCKKIRDMEGHRLRVGALAWSSSVLSSGSRD KSILQRDIRAPEDFVSKLSGHKSEVCGLKWSYDNRQLASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNS HLSCMDTGSQVCNLVWSKNVNEIVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNSDSEIGASSLG RTTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10001192 [exp]	0	1
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	5.5	0.8202
AT1G10790			unknown protein		Lus10022968 [exp]	5.7	0.8282
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	6.7	0.8001
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10023286 [exp]	13.6	0.7884
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	14.9	0.7651
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	20.5	0.7848
					Lus10034878 [exp]	20.9	0.7681
AT5G45290			RING/U-box superfamily protein...		Lus10030117 [exp]	23.0	0.7107
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	25.2	0.7724
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	25.8	0.7825

Compare expression of checked genes

Lus10001192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.