Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033137 [exp] 352 / 2e-125 ND / Lus10000977 [exp] 311 / 2e-106 ND / Lus10014481 [exp] 190 / 2e-62 ND / Lus10010051 [exp] 179 / 6e-54 ND / Lus10012377 [exp] 160 / 1e-50 ND / Lus10008794 [exp] 149 / 1e-46 ND / Lus10030337 [exp] 149 / 3e-46 ND / Lus10028667 [exp] 153 / 6e-46 ND / Lus10025417 [exp] 145 / 6e-44 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001193 pacid=23151486 polypeptide=Lus10001193 locus=Lus10001193.g ID=Lus10001193.BGIv1.0 annot-version=v1.0 ATGAGCGAGGAATCTGCCGAGGCCTTCGTGCACGGGAGATGGAATAGAGTGTTGAACGCACTTTCCCACAAAGAATTCAACGAAGAGTGGGGACGCATGG TTGATAGTGATTGGACCAATGTTGGAGGGTTGATCGAGTACCTAACCAGTGAGTGGCTTCCGTGCAAGACTCAGTGGGCTTATTGCGATACCAATCAGGT TTTCCATATTGGAAACACGAGCACTAATAGGGTAGAATCCCAACACTCGTCGCTGAAGACGTGGTACAACTCTTCCAATCAAGCTGTTGACTCTCTGTTC GAGGGTTACCATGCATCCATCGAGGGGCAGGTCATCGAAGTTCAGAAGGCATTGGATGACTCGTGCGCAAAGGTGTACCGTTACGCGCAAAGACCACCAT TTGTTTATCTCAATAATGCGGTTTCGGCATGGGCGATTGAGCTTTTGACAGAAGAGCTCTCGAAGGACACACCATGTGACTGTGTAGTGGAGACAACACA TGGAATCCCGTGTTCTTGTAGTTTACACTCTAAGGAGGCCGCTGATGAGGAGCTGAACCCATACCACTTACATAAATTTTGGCGTTCATTGTCGTACACG AGCCCGGCAGAGCACGAGATGTGGGCTGATATGGGCTGA
AA sequence Show only first row Show all	>Lus10001193 pacid=23151486 polypeptide=Lus10001193 locus=Lus10001193.g ID=Lus10001193.BGIv1.0 annot-version=v1.0 MSEESAEAFVHGRWNRVLNALSHKEFNEEWGRMVDSDWTNVGGLIEYLTSEWLPCKTQWAYCDTNQVFHIGNTSTNRVESQHSSLKTWYNSSNQAVDSLF EGYHASIEGQVIEVQKALDDSCAKVYRYAQRPPFVYLNNAVSAWAIELLTEELSKDTPCDCVVETTHGIPCSCSLHSKEAADEELNPYHLHKFWRSLSYT SPAEHEMWADMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001193 [exp]	0	1
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10032345 [exp]	3.3	0.7029
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	9.3	0.6879
					Lus10037909 [exp]	12.4	0.6429
					Lus10003753 [exp]	14.7	0.6740
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	15.8	0.6783
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	16.4	0.6740
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	18.0	0.6740
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	19.4	0.6740
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	27.2	0.6161
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	27.3	0.6256

Compare expression of checked genes

Lus10001193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.