Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22920 338 / 2e-117 ATNYE1, SGR1, STAY-GREEN1 non-yellowing 1 (.1) AT4G11910 330 / 6e-114 SGR2, STAY-GREEN2 unknown protein AT4G11911 304 / 6e-104 unknown protein AT1G44000 179 / 5e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024484 [exp] 506 / 0 AT4G22920 340 / 4e-118 non-yellowing 1 (.1) Lus10042769 [exp] 178 / 5e-55 AT1G44000 247 / 2e-82 unknown protein Lus10029738 [exp] 177 / 4e-54 AT1G44000 269 / 1e-90 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119600 [exp] 370 / 9e-130 AT4G22920 352 / 4e-123 non-yellowing 1 (.1) Potri.001G112600 [exp] 358 / 3e-125 AT4G22920 336 / 7e-117 non-yellowing 1 (.1) Potri.002G075700 [exp] 190 / 9e-60 AT1G44000 259 / 2e-87 unknown protein Potri.005G184700 [exp] 190 / 2e-59 AT1G44000 279 / 8e-95 unknown protein Potri.001G112500 [exp] 56 / 9e-10 AT4G22920 50 / 6e-08 non-yellowing 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001194 pacid=23151484 polypeptide=Lus10001194 locus=Lus10001194.g ID=Lus10001194.BGIv1.0 annot-version=v1.0 ATGGGGAGCTTGACTTTCACTCCATGGCTTCCTTCTTCAAAGCTCAAACCAACTGGGTTTGAGCGGCACAATAACAACATGTCTATTTTCCCCTCTAGGA GGAAGCCCTTGAGCAAGAACAAGGGTTTCTCTTCTGTCGTTCCTGTGGCTAGGCTATTTGGACCATCAATATTTGAAGCTTCGAAGCTCAAGGTGTTGTT TTTAGGGGTTGATGAGAAGAAGCATCCTGGGAAATTGCCAAGGACTTACACCCTCACCCACAGTGATATTACCTCTAAGCTCACTCTCGCCATCTCTCAG ACCATTAATAACTCTCAGCTGCAGGGATGGGCGAACAAATTGTACAGAGATGAAGTGGTGGCAGAGTGGAAGAAGGTGAAAGGAAAGATGTCTCTCCATG TCCACTGCCATATCAGTGGAGGCCATTTTCTCCTGGATCTTATTGCTAAGCTCAGATACTACATCTTCTGTAAAGAACTTCCTGTGGTGCTGAAGGCGTT TGTCCACGGAGATGGGAATCTGTTGAACAACTACCCGGAATTGCAGGAGGCATTGGTTTGGGTTTACTTCCATTCAACAATCCCAGAATTCAACAAGGTG GAGTGCTGGGGCCCACTAATGGATGCATCAGCGCCACCACCACCACCACCTAAAAGGAAGGAGTTTGGGAATGGTGGGTCTGAGGTAGGCCAGGGGGAGG AAGAAGAAACGGGGAAGGCAAGCTCATCAAGCAACTGGGAATTGCCAAGAGCATGCCAAGAAGACTGTAGCTGTTGTTTTCCACCAATCAGCAACATCCC GTGGTCTCAAAACTTTCCCTTTGCTTCTGAAACTACGCAACCTGGTGCTGGGACAGCGACCCAACAAGGCTTAAATCAGCCCTTCCAGTGA
AA sequence Show only first row Show all	>Lus10001194 pacid=23151484 polypeptide=Lus10001194 locus=Lus10001194.g ID=Lus10001194.BGIv1.0 annot-version=v1.0 MGSLTFTPWLPSSKLKPTGFERHNNNMSIFPSRRKPLSKNKGFSSVVPVARLFGPSIFEASKLKVLFLGVDEKKHPGKLPRTYTLTHSDITSKLTLAISQ TINNSQLQGWANKLYRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLIAKLRYYIFCKELPVVLKAFVHGDGNLLNNYPELQEALVWVYFHSTIPEFNKV ECWGPLMDASAPPPPPPKRKEFGNGGSEVGQGEEEETGKASSSSNWELPRACQEDCSCCFPPISNIPWSQNFPFASETTQPGAGTATQQGLNQPFQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	0	1
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	1.0	0.9556
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	1.7	0.9309
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	2.6	0.9244
AT1G07040			unknown protein		Lus10013272 [exp]	2.8	0.9281
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	4.2	0.9212
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	4.9	0.9267
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	4.9	0.9151
AT1G27300			unknown protein		Lus10037034 [exp]	6.1	0.8897
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	6.9	0.9355
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	7.7	0.9272

Compare expression of checked genes

Lus10001194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.