Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62990 155 / 1e-47 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G25220 129 / 3e-36 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 127 / 9e-36 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 117 / 8e-32 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G70510 42 / 0.0001 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G62360 40 / 0.0003 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024485 [exp] 174 / 5e-55 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001934 [exp] 126 / 3e-35 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10006291 [exp] 125 / 1e-34 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 123 / 5e-34 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10003183 [exp] 74 / 2e-16 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112200 [exp] 176 / 2e-55 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.018G022700 [exp] 132 / 3e-37 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G114100 [exp] 128 / 2e-36 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G259400 [exp] 129 / 3e-36 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G190000 [exp] 127 / 3e-36 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.015G079100 [exp] 46 / 4e-06 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.011G011101 [exp] 45 / 9e-06 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 45 / 9e-06 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.012G087100 [exp] 44 / 1e-05 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 42 / 8e-05 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03791 [flax] [poplar] KNOX2 KNOX2 domain PF03790 [flax] [poplar] KNOX1 KNOX1 domain
Representative CDS sequence Show only first row Show all	>Lus10001195 pacid=23151483 polypeptide=Lus10001195 locus=Lus10001195.g ID=Lus10001195.BGIv1.0 annot-version=v1.0 ATGCAAGAGCCGAGCTTGGGCATGATGGGAGGAGGAGAAATGGAGCAGAGCAGCCGGGAGGTGAAGGCGGAGATAGCGACACACCCACTTTACGAGCAGT TGTTGGGTGCACACGTGGCATGCCTCAGAGTAGCTACTCCAATTGACCAGCTTCCCCTCATTGACTCTCAGCTCTCTCAATCTCATCACCTCCTCCGCTC TTACGCCGGCTCCGGCTGCAACCTAACCCCTCACGAACGCCAAGACCTTGATAACTTCTTGGCGCAGTATTTGATAGTGTTGTGTGGCTTCAAGGAGCAG CTTCAACAACACGTCAGAGTTCACGCCGTTGAGGCCGTTATGGCCTGCCGTGAAATCGAAACCTCCTTCCAATCTCTCACAGGTCTCCGTCTCTTTTGTT TTCTTACGGTGGTTTGTCTCTACATAATTTCAGGTTTTACATGGAATTTTTTTGTATGGACTATAATTTTTCAAAAGCATTAA
AA sequence Show only first row Show all	>Lus10001195 pacid=23151483 polypeptide=Lus10001195 locus=Lus10001195.g ID=Lus10001195.BGIv1.0 annot-version=v1.0 MQEPSLGMMGGGEMEQSSREVKAEIATHPLYEQLLGAHVACLRVATPIDQLPLIDSQLSQSHHLLRSYAGSGCNLTPHERQDLDNFLAQYLIVLCGFKEQ LQQHVRVHAVEAVMACREIETSFQSLTGLRLFCFLTVVCLYIISGFTWNFFVWTIIFQKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	1.0	0.9246
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	2.0	0.9023
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	2.4	0.8908
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028854 [exp]	7.9	0.7951
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	8.1	0.8333
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	8.2	0.8577
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	11.5	0.8312
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	12.2	0.8013
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	12.6	0.7996
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	13.1	0.7762

Compare expression of checked genes

Lus10001195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.