Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47870 238 / 2e-80 RAD52-2B, RAD52-2 radiation sensitive 51-2, unknown protein AT1G71310 134 / 1e-39 RAD52-1B.2, RAD52-1B.1, RAD52-1A, RAD52-1 radiation sensitive 51-1, cobalt ion binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000280 [exp] 382 / 3e-137 AT5G47870 238 / 3e-80 radiation sensitive 51-2, unknown protein Lus10002565 [exp] 366 / 8e-131 AT5G47870 237 / 8e-80 radiation sensitive 51-2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158500 [exp] 251 / 3e-85 AT5G47870 233 / 3e-78 radiation sensitive 51-2, unknown protein Potri.001G072300 [exp] 248 / 6e-84 AT5G47870 223 / 3e-74 radiation sensitive 51-2, unknown protein Potri.019G068500 [exp] 134 / 1e-39 AT1G71310 233 / 9e-79 radiation sensitive 51-1, cobalt ion binding (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001196 pacid=23173059 polypeptide=Lus10001196 locus=Lus10001196.g ID=Lus10001196.BGIv1.0 annot-version=v1.0 ATGGCTGTGCAGTGCAATGGCAGCAGCTATTTTGTGACTAAATCAACGCAGGCTGCTGTATCACCTTCGCTAGCATCTTCATTCTATAAAACAACAAGAA GTAGAAATCGTAATATAGGTGGTTTCGGCAAGATTCGGCTCGTGTCTGCACTTGGTGGTGGTGGCGGGGGAAACAGTAGCAATGATGGTAACAAGAAGAA GGGTGTTCCTAACTCCAATTATGTGGTGCCTTTGGATAAATCTTTCTCTTCCGCACAATCTTCCTGTATAACTCGCCCACTTGCGGAGATCTTACGTGAT CTGAACAAGAGAATTCCGGATAACATAATTAAGCCTTCGCAACCTCCGACCTCCATTCCCTGGTACCATGCCAACCGCATGTTGAGCTTCTATGCCCCTG GATGGTGTGGAGAAATAAGGGATGTTATATTCTCAGACAATGGTGGTGTTACTGTCGTTTATCGTGTTACGATACGCGGATCTGATGGAGAGGCACACCG TGAATCAAGTGGCACAGTATCACCTGTTGACGGCAACATTGTGGATCCTGTTGCAGCAGCAGAAGAAATAGCCTTCTGCAGAGCGTGTGCTAGGTTTGGC CTTGGCTTGTATCTGTACCATGAAGAATAA
AA sequence Show only first row Show all	>Lus10001196 pacid=23173059 polypeptide=Lus10001196 locus=Lus10001196.g ID=Lus10001196.BGIv1.0 annot-version=v1.0 MAVQCNGSSYFVTKSTQAAVSPSLASSFYKTTRSRNRNIGGFGKIRLVSALGGGGGGNSSNDGNKKKGVPNSNYVVPLDKSFSSAQSSCITRPLAEILRD LNKRIPDNIIKPSQPPTSIPWYHANRMLSFYAPGWCGEIRDVIFSDNGGVTVVYRVTIRGSDGEAHRESSGTVSPVDGNIVDPVAAAEEIAFCRACARFG LGLYLYHEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Lus10035920 [exp]	2.0	0.8137
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	4.2	0.7638
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	11.7	0.7041
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	11.8	0.7303
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10041166 [exp]	14.4	0.7335
AT3G13690			Protein kinase protein with ad...		Lus10011656 [exp]	16.1	0.7543
AT5G47710			Calcium-dependent lipid-bindin...		Lus10038745 [exp]	16.2	0.6712
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	19.0	0.6824
AT3G54360			zinc ion binding (.1)		Lus10024116 [exp]	20.5	0.6962
AT5G06440			unknown protein		Lus10013601 [exp]	39.8	0.6677

Compare expression of checked genes

Lus10001196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.