Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29570 343 / 1e-120 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) AT1G07370 339 / 3e-119 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005874 [exp] 276 / 1e-94 AT2G29570 389 / 3e-138 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Lus10038360 [exp] 120 / 2e-35 AT2G29570 109 / 9e-31 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Lus10038359 [exp] 0 / 1 AT2G29570 70 / 3e-21 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247700 [exp] 350 / 1e-123 AT2G29570 475 / 4e-172 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Potri.009G040900 [exp] 337 / 3e-118 AT2G29570 484 / 9e-176 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [flax] [poplar] DNA_clamp PF00705 [flax] [poplar] PCNA_N Proliferating cell nuclear antigen, N-terminal domain CL0060 [flax] [poplar] DNA_clamp PF02747 [flax] [poplar] PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001197 pacid=23173049 polypeptide=Lus10001197 locus=Lus10001197.g ID=Lus10001197.BGIv1.0 annot-version=v1.0 ATGCCGGAGCTTCGGCTAGTGCAGGGATCCCTTCTGAAGAAAGTGATGGACGCCATCAAAGACCTTGTCAACGACGCCAACTTCGATTGTTCCTCCACCT CCTTTGCACCCCAAGCCATGGACTCAAGCCACGTTGCCCTTGTTGCTCTCCTCCTCCGAGCTGAGGGTTTTGAGCACTTCCGTTTACCGGAACATCTCCA TGGGGATGAACCTTGGGACGTCGACAGTGAGCACCTGGGAATCCCTGATGCCGAGTACCAGGCTATTGTCCGAATGCCTTCAGCAGAGTTCACTAGAATT TGCAAAGATCTTGCCACGATTGGTGACACTGTTGTCATATCCGTGACAAAGGAAGGTGTGAAATTCTCTACACGGGGTGATATAGGAAGTGCAAATGTTG TACTGAGGCAGAACACCACTGTTGACAAGCCAGAGGAAGCGACAATCATAGAGATGAATGAGCCTGTATCCCTGACATTTGCTTTGAGATACATGAACTC CTTCACAAAGGCAGCTCCATTGTCGAGTACTGTGACTCTTAGTCTGTCTGCAGAATTACCCATCGTGGTGGAGTACAAGATTGCTGAGATGGGGTACATT AGATTCTACTTGGCTCCTAAGATAGAGGAGGATGAAGAGGAGAGCAAGCCATAA
AA sequence Show only first row Show all	>Lus10001197 pacid=23173049 polypeptide=Lus10001197 locus=Lus10001197.g ID=Lus10001197.BGIv1.0 annot-version=v1.0 MPELRLVQGSLLKKVMDAIKDLVNDANFDCSSTSFAPQAMDSSHVALVALLLRAEGFEHFRLPEHLHGDEPWDVDSEHLGIPDAEYQAIVRMPSAEFTRI CKDLATIGDTVVISVTKEGVKFSTRGDIGSANVVLRQNTTVDKPEEATIIEMNEPVSLTFALRYMNSFTKAAPLSSTVTLSLSAELPIVVEYKIAEMGYI RFYLAPKIEEDEEESKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	0	1
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	2.4	0.9269
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	4.0	0.9331
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	4.9	0.9328
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	5.0	0.9339
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10042405 [exp]	5.5	0.9066
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	6.5	0.9168
AT4G01040			Glycosyl hydrolase superfamily...		Lus10029447 [exp]	9.3	0.8808
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	9.5	0.9331
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	10.4	0.9039
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	10.5	0.9300

Compare expression of checked genes

Lus10001197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.