Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07380 383 / 9e-129 Neutral/alkaline non-lysosomal ceramidase (.1) AT5G58980 374 / 9e-126 Neutral/alkaline non-lysosomal ceramidase (.1) AT2G38010 370 / 7e-124 Neutral/alkaline non-lysosomal ceramidase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005873 [exp] 533 / 0 AT1G07380 1178 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021122 [exp] 382 / 9e-129 AT2G38010 1096 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10017188 [exp] 363 / 4e-120 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10034564 [exp] 187 / 1e-56 AT5G58980 458 / 9e-156 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021829 [exp] 117 / 3e-32 AT5G58980 125 / 2e-33 Neutral/alkaline non-lysosomal ceramidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040600 [exp] 450 / 7e-155 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.001G247400 [exp] 446 / 2e-153 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.016G110000 [exp] 427 / 4e-146 AT1G07380 1137 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.002G013300 [exp] 292 / 8e-94 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04734 [flax] [poplar] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10001198 pacid=23173066 polypeptide=Lus10001198 locus=Lus10001198.g ID=Lus10001198.BGIv1.0 annot-version=v1.0 ATGACTCTTCCGTATCAGTGGGCACCTTCGGTTCTTCCAATCCAAATTCTTCGTGTGGGTCAGCTAGTTATTCTCACTGTTCCCGGAGAATTCACAACAA TGGCTGGAAGACGCCTACGGGATGCGGTGGAGCAAGTGCTGACAAGTGACAAGAATGAAAACGTCCACATTGTAATAGCTGGATTGACTAATACCTACTC CCAATATATTTCTACCATTGAAGAATACGAAGTACAGAGATACGAGGGTGCATCTACTCTATATGGTCCACACACATTGAATGCATACATTCAAGAATTC CAAAAGCTGGCAGGAGCTATAGTCCAGGATGAGCAGGTGGAGCCTGGTCCTCAGCCTCCGGATCTGCTCAGCAAGCAAATTAGCATGCTTACACCTGTTC TGATGGATACTACCCCAATCGGCACGCATTTTGGCGATTGCAGCTCAGACGTCCCCAAAAACGCCACGTACGAAAGGGGGGACAAGGTAGCAATAGTGTT CTGGTCAGCTTGCCCAAGGAACGATCTGATGACAGAAGGAACGTTTGCTCTGGTAGAGATTCTTCAAGGCGCAGATACATGGGTCCCTGCCTATGATGAT GACGATTTCTTCCTGAGGTTCATATGGTCAAGACCAGCAAAGCTGAGTTCTCGCAGCCATGCTACCATAGAGTGGAGGATCCCACAGTCGGCTACTCCTG GTGTGTATAGGATCAGACATTTTGGTGCTGCAAAGGCACTTCTTGGCTCAGTTCGTCATTTCACTGGGTTCTCCAATGCTTTTGTTGTAACATGA
AA sequence Show only first row Show all	>Lus10001198 pacid=23173066 polypeptide=Lus10001198 locus=Lus10001198.g ID=Lus10001198.BGIv1.0 annot-version=v1.0 MTLPYQWAPSVLPIQILRVGQLVILTVPGEFTTMAGRRLRDAVEQVLTSDKNENVHIVIAGLTNTYSQYISTIEEYEVQRYEGASTLYGPHTLNAYIQEF QKLAGAIVQDEQVEPGPQPPDLLSKQISMLTPVLMDTTPIGTHFGDCSSDVPKNATYERGDKVAIVFWSACPRNDLMTEGTFALVEILQGADTWVPAYDD DDFFLRFIWSRPAKLSSRSHATIEWRIPQSATPGVYRIRHFGAAKALLGSVRHFTGFSNAFVVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10001198 [exp]	0	1
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10012194 [exp]	3.2	0.7991
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	7.7	0.8080
AT2G45040			Matrixin family protein (.1)		Lus10042881 [exp]	12.5	0.6526
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	19.1	0.7971
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10000013 [exp]	19.6	0.7508
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	22.4	0.7687
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	25.0	0.7418
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008499 [exp]	25.4	0.7378
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	35.2	0.7603
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	39.2	0.7548

Compare expression of checked genes

Lus10001198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.