Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026445 [exp] 147 / 1e-41 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10029487 [exp] 135 / 1e-38 ND / Lus10030315 [exp] 109 / 2e-27 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10006887 [exp] 89 / 1e-20 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10006918 [exp] 76 / 7e-16 ND / Lus10010590 [exp] 71 / 4e-14 ND / Lus10000293 [exp] 68 / 3e-13 ND 48 / 2e-05 Lus10036312 [exp] 67 / 7e-13 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023006 [exp] 64 / 8e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001199 pacid=23173064 polypeptide=Lus10001199 locus=Lus10001199.g ID=Lus10001199.BGIv1.0 annot-version=v1.0 ATGGGTGTCCTGATTGAATTGTCTTACCAAATTGTTCTGCAGTTTTGCCTCAACCCCTCTTCTGTTTGTGCCATAGGGAGAACTGCTGCCTATAGTGGTG CAACGAGCCAGGTTTTTACCACCCTCCAACACCCTATGGTGGAATCGCTTAAAACGGTGTACGTTAACCATCTTCAACTTCTGAATACTACTTCTTTCCC GTTTACTACCCCTGAGAAATTGAAACAACTCATTACCGAGTCAGCGGAGCTACTAGCCCTATATACTGGGGGCGGCGACTCGGTGAGTCATTTCGGCGTT CGCGCTTTTGTTGTTCTCAAACAGTTATGCGTTCTTATGCTCTTTTTTTCCGCTAACACCACGTACCGCTGCCATACCACAATTCTCACCTTTGATGAAC ACCAGCCTTGGTACTACAATGCTTGCCCTCAGCGTTCGTCATCTGTGGTCGCAAATGACAATGGCTTTTGGTGTAAGAATCATGATACTGTCCTTGCTTC GGATGTAACATACATGTATGCATCCATTGTGTCCCATTTTACAATCCGAATATATGTTCCACTTTTTGCTTTCCCAGTTAGACCTCTGCCTTGTCCTCAA GGTATCGTTTCAAGCTAG
AA sequence Show only first row Show all	>Lus10001199 pacid=23173064 polypeptide=Lus10001199 locus=Lus10001199.g ID=Lus10001199.BGIv1.0 annot-version=v1.0 MGVLIELSYQIVLQFCLNPSSVCAIGRTAAYSGATSQVFTTLQHPMVESLKTVYVNHLQLLNTTSFPFTTPEKLKQLITESAELLALYTGGGDSVSHFGV RAFVVLKQLCVLMLFFSANTTYRCHTTILTFDEHQPWYYNACPQRSSSVVANDNGFWCKNHDTVLASDVTYMYASIVSHFTIRIYVPLFAFPVRPLPCPQ GIVSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001199 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040382 [exp]	51.3	0.5167
AT3G56720			unknown protein		Lus10027280 [exp]	55.0	0.5789
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10011888 [exp]	67.3	0.5325
AT3G07120			RING/U-box superfamily protein...		Lus10038180 [exp]	128.9	0.4966
					Lus10000289 [exp]	168.2	0.4986

Compare expression of checked genes

Lus10001199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.