Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46970 1339 / 0 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) AT3G29320 1023 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) AT3G47000 879 / 0 Glycosyl hydrolase family protein (.1) AT3G47040 855 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47010 854 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 830 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 707 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 655 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 648 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 553 / 0 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005871 [exp] 1203 / 0 AT3G47000 908 / 0.0 Glycosyl hydrolase family protein (.1) Lus10037093 [exp] 1001 / 0 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10042688 [exp] 993 / 0 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10005706 [exp] 710 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010657 [exp] 687 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 683 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 681 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 672 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013390 [exp] 667 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041800 [exp] 1390 / 0 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.010G160200 [exp] 989 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.009G042800 [exp] 971 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.004G048600 [exp] 764 / 0 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.008G013500 [exp] 711 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 694 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 689 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 689 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 679 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.004G123600 [exp] 568 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00343 [flax] [poplar] Phosphorylase Carbohydrate phosphorylase CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001200 pacid=23173050 polypeptide=Lus10001200 locus=Lus10001200.g ID=Lus10001200.BGIv1.0 annot-version=v1.0 ATGAGCACTGCCGGCGGTTGCCTCTACAAGGACCCCAATGAACCGGTGGAAGTTCGGGTCAAGGACCTTCTTTCCCGGATGACTCTCCAAGAGAAGCTTG CCCAGATGATTCAACTCGATCGCGTCGTTGCCGATGCTCATTACCTCCGGGACCTCGCAGTCGGGAGTGTGCTGAGCACTGGCGGAAGCGCGCCTTTCGA AAATGCGTTGACCTCTGATTGGGCGGATATGGTTGATTGGTTTCAGAAGCTGGCACTGGAATCCAGGCTTGGGATACCCATTATATACGGGGTTGATGCT GTTCATGGCAACAATTGTGTTTATGGTGCCACTGTTTTCCCTCACAACGTTGGCCTTGGCGCCACAAGAGATGCAGATTTGGTGAAAAGGATAGGTTCTG CAACTGCACTTGAAGTCAGGGCAAGCGGTATTCAATATACTTTTGCTCCTTGTATAGCTGTAGACAAGGACCCCCGCTGGGGAAGATGCTACGAGAGTTA CAGTGAAGACACTAATATAGTTAGAAATATGACATCCATTATCACTGGCCTCCAGGGAGAGCCACCTGAAGGACACCCACTTGGCTATCCTTATGTTGCA GGAAGAAACAACGTAGTTGCATGTGCGAAGCATTTTGTTGGTGATGGGGGCACACACAAAGGTCTAAATGAAGGGAATACAATATGTTCATATGAAGATC TCGAGAGGATTCACATGGCTCCCTATTTGGATTGTATCTCTCAAGGTGTGGCTACCATTATGGCTTCCTATTCTAGTTGGAACGGACGGAAGCTACACAC TGACCGTTTTCTCCTGACTGAAGTCTTGAAAGATAAGCTGGGTTTTAAGGGATTCGTCATTTCTGACTGGGAAGGACTAAACAGACTTAGCCAACCTCGT GGTTCCAACTACCGTCACTGTGTTGCCAGTGCCGTTAATGCAGGAATAGATATGGTGATGGTAGGCCGGAAATATGAACAATTTGTAGATGATATATTCT CTCTTGCAAAATCAGGGGAGATATCAACAGCCAGGATTGATGATGCAGTTGAAAGAATACTCAGAGTGAAGTTTATTGCTGGTCTATTTGAACATCCCTT TGCTGATAGGTCTTTACTAGAGATAGTTGGTTGCAAGCTACACAGAGACTTGGCACAGGAAGCAGTCCGCAAATCATTGGTTCTGCTGAAAAATGGCAAG GATTCAAACAAACCTTTGCTCCCATTGGACAAGAACGCTAGAAAGATACTTGTCGCTGGGACTCATGCTGATAATCTTGGATATCAGTGCGGAGGATGGA CCATAGCTTGGTACGGGTTAGGCGGCAGGATTACCATTGGCACTACCATTCTGGATGCAGTCAGGAAAGCAGTGGGAGAGAACACAGAAGTCATCTTTGA GGAATATCCTTCACCAGAAACCTTAGCACGGAAGGACTTCTCCTATGCCATTGTAGCCGTCGGTGAACCTCCATATGCAGAATTTACAGGGGACGATCCG GAGCTAGTTATCCAAAATGAAGGACGTGAGATTGTCAGCTTGGTAGCTGACAGAATCCCCACACTGGCGATTCTTGTATCTGGAAGACCACTAGTCCTAG AACCACATTTACTGGAGAAGATAGAAGCACTTGTTGCTGCCTGGTTGCCTGGAACTGAAGGGGATGGGATTGCGGATGTTATCTTTGGTGGAGAAGATTT TAAGGGACAGTTGCCAGTGACATGGTTCAAGAAGGTTGATCAGTTGCCAATGAAATTCGACGGTGGGATTAACAATGTATATGACCCTCTGTTTCCTCTT GGTGTGAACCCAGGCGGTGTACCCTCGAACATCCCGGCGGCGGCTTTCCCATCCTCGGATTCGCCGTCGGAGATTGCTTCCAATGTGAATTACCATGCGC AGTACAGCCCTCATTTCTCTCCTTTCAAGTTCGATTCCGAGCAGGCCTACTTTGCCACTGCCGAAAGCATTAGAGATCGCCTCCTTCAGCAATGGAATGC AACCTATCTCCATTTCCACAATGTTGACCCAAAGCAAACAGCTTTGACTAATGCGATTGGGAATCTCAATGTTCAAAATGCATATGCTGAAGCTTTAAAG AAGTTGGGACATCAGCTTGAAGACATAATGGAGCAGGAGAAAGATGCTGCACTTGGAAATGGTGGTCTTGGGAGACTTGCGTCTTGCTTTCTGGATTCAA TGGCGACATTGAATTTGCCTGCATGGGGATATGGTCTTAGATACAGATATGGACTGTTCAAGCAGCGAATCACCAAGGAGGGCCAGGAAGAAACAGCTGA AGATTGGCTTGAGAAGTTCAGTCCTTGGGAAGTCGTTAGGCATGATGTTGTGTACCCTGTCAGGTTTTTTGGAGAGGTTCAGATTAATGCAGATGGAACG CGAAAATGGGCTGGTGGAGAAGTTGTCCAGGCTTTGGCTTATGATGTCCCTATCCCAGGATACAAAACCAAGAACACTATCAGTCTCCGCCTGTGGGAAG CGAAAGCTTCTTCTTCAAACTTTGATCTATATCAATTTAATGAAGGCAATTATGAGTCTGCTGCAAAGCATCATTCACAAGCTGAACAGATCTGTGCTGT TCTTTATCCTGGTGATGCTACGGAAAGTGGAAAGCTATTGCGTCTGAAGCAGCAATTCTTCCTGTGCAGTGCATCGCTTCAGGATACGATGCAAAGGTTT AAAGAGAGGAGAAAAGGCAGTAAATCATGGAAGTGGTCAGAATTTCCTAGCAAGGTTGCAGTACAACTTAACGATACTCATCCTACTCTTGCCATTCCTG AGCTGATGCGGTTGCTTATGGATGAAGAAAAACTTGGCTGGGAGGAAGCTTGGGATGTGACATCTGGAACCATTGCTTACACAAATCACACTGTCCTCCC TGAAGCACTAGAGAAATGGTCCCAGGCTGTGATGTGGAAACTTCTCCCTCGACATATGGAAATCATAGAAGAGATAGACAAAAGGTTCATGGGAATGGTT CGCGACAAAGTTCCAAAACTAGAGAAGATACTTCCCAGCTTGCGTGTCTTGGATACCAATGCAGAAAAGCCAGTTGTTCGGATGGCCAATTTATGTGTTG TATCTGCACACACAGTAAACGGTGTTGCTGAGCTACATAGTGACATCTTGAAGAAGGAGCTATTTGCAGACTATCTCACAATATGGCCTAATAAGTTCCA GAACAAAACTAATGGCATTACACCTCGCCGTTGGCTTAGCTTCTGTAATCCAGAACTCAGTAGCATAATTACCAAGTGGTTAAAAACTGACAAGTGGGTA ACTGATCTTGATCAACTCTCTGGCCTAAGAAAGTTTGCAGATGATGTGATTCTCCAAGGTGAATGGGCAGCTGCCAAGATGGCGAGTAAGAAACGCTTGG CAGAGTATGTACTTAAAGTCACAGGCGTGAGCATTGATCCAAATAGTCTTTTTGACATCCAAATTAAGCGTATTCATGAGTACAAGAGGCAGCTTCTGAA TATTTTGGCTGCAGTTTATCGTTACAAGAAACTTAAGGAAATGAGTGCTGAACAGAGGAAGACTTCAACTCCACGTACAATCATGATCGGTGGAAAAGCA TTTGCAACGTATACGAATGCTAAAAGGATAGTGAAACTAGTCTATGACGTAGGAGATGTTGTCAATTCTGATCCTGAAGTCAATGAATATCTTAAGGTTG TATTTATTCCAAACTACAATGTGTCGGTTGCTGAGGTGCTGATCCCAGGGAGTGAGCTTTCACAGCATATCAGCACAGCTGGTATGGAGGCAAGTGGAAC AAGCAACATGAAATTCTCGCTGAATGGATGTGTGATAATAGGAACCCTAGACGGGGCTAATGTTGAAATCAGGGAGGAAATAGGAGAGGATAACTTCTTT CTCTTTGGTGCAACAGCTGATCAAGTCCCTCAACTGCGAAAGGACAGAGAGAATGGAAAGTTCAAACCGGATCCACGTTTTGAGGAGGCTAAGCAGTACA TAAAAAGTGGAGCGTTCGGGAAGTATGACTACAGTCAACTTCTGGATTCCCTAGAAGGGAACTCCGGATTTGGACGGGGTGACTACTTCCTCGTTGGCCA TGACTTCCCAAGCTACTTGGATGCTCAGGAAAGGGTAGACAAATCATACATGGATCGCAAGAAATGGCTGAGGATGTCTATAATGAACACTGCTGGCAGC GGCAAGTTCAGCAGCGATCGAACGATCTCGCAGTATGCTAAGGAGATCTGGAATGTGGAGGGGTGTAGAGTGCCGTAG
AA sequence Show only first row Show all	>Lus10001200 pacid=23173050 polypeptide=Lus10001200 locus=Lus10001200.g ID=Lus10001200.BGIv1.0 annot-version=v1.0 MSTAGGCLYKDPNEPVEVRVKDLLSRMTLQEKLAQMIQLDRVVADAHYLRDLAVGSVLSTGGSAPFENALTSDWADMVDWFQKLALESRLGIPIIYGVDA VHGNNCVYGATVFPHNVGLGATRDADLVKRIGSATALEVRASGIQYTFAPCIAVDKDPRWGRCYESYSEDTNIVRNMTSIITGLQGEPPEGHPLGYPYVA GRNNVVACAKHFVGDGGTHKGLNEGNTICSYEDLERIHMAPYLDCISQGVATIMASYSSWNGRKLHTDRFLLTEVLKDKLGFKGFVISDWEGLNRLSQPR GSNYRHCVASAVNAGIDMVMVGRKYEQFVDDIFSLAKSGEISTARIDDAVERILRVKFIAGLFEHPFADRSLLEIVGCKLHRDLAQEAVRKSLVLLKNGK DSNKPLLPLDKNARKILVAGTHADNLGYQCGGWTIAWYGLGGRITIGTTILDAVRKAVGENTEVIFEEYPSPETLARKDFSYAIVAVGEPPYAEFTGDDP ELVIQNEGREIVSLVADRIPTLAILVSGRPLVLEPHLLEKIEALVAAWLPGTEGDGIADVIFGGEDFKGQLPVTWFKKVDQLPMKFDGGINNVYDPLFPL GVNPGGVPSNIPAAAFPSSDSPSEIASNVNYHAQYSPHFSPFKFDSEQAYFATAESIRDRLLQQWNATYLHFHNVDPKQTALTNAIGNLNVQNAYAEALK KLGHQLEDIMEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQRITKEGQEETAEDWLEKFSPWEVVRHDVVYPVRFFGEVQINADGT RKWAGGEVVQALAYDVPIPGYKTKNTISLRLWEAKASSSNFDLYQFNEGNYESAAKHHSQAEQICAVLYPGDATESGKLLRLKQQFFLCSASLQDTMQRF KERRKGSKSWKWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEKLGWEEAWDVTSGTIAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFMGMV RDKVPKLEKILPSLRVLDTNAEKPVVRMANLCVVSAHTVNGVAELHSDILKKELFADYLTIWPNKFQNKTNGITPRRWLSFCNPELSSIITKWLKTDKWV TDLDQLSGLRKFADDVILQGEWAAAKMASKKRLAEYVLKVTGVSIDPNSLFDIQIKRIHEYKRQLLNILAAVYRYKKLKEMSAEQRKTSTPRTIMIGGKA FATYTNAKRIVKLVYDVGDVVNSDPEVNEYLKVVFIPNYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFSLNGCVIIGTLDGANVEIREEIGEDNFF LFGATADQVPQLRKDRENGKFKPDPRFEEAKQYIKSGAFGKYDYSQLLDSLEGNSGFGRGDYFLVGHDFPSYLDAQERVDKSYMDRKKWLRMSIMNTAGS GKFSSDRTISQYAKEIWNVEGCRVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	0	1
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	2.2	0.8934
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	3.7	0.8912
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	4.2	0.8573
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	4.6	0.8882
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10038488 [exp]	6.5	0.8347
AT2G21960			unknown protein		Lus10006822 [exp]	7.7	0.8496
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	7.7	0.8735
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	9.9	0.8596
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	11.1	0.8866
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	13.5	0.8436

Compare expression of checked genes

Lus10001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.