Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05960 245 / 4e-76 ATSTP6 sugar transporter 6 (.1) AT5G26250 243 / 1e-75 Major facilitator superfamily protein (.1) AT5G26340 241 / 1e-74 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G07340 239 / 6e-74 ATSTP2 sugar transporter 2 (.1) AT1G50310 234 / 1e-71 ATSTP9 sugar transporter 9 (.1) AT3G19940 232 / 5e-71 Major facilitator superfamily protein (.1) AT4G02050 226 / 9e-69 STP7 sugar transporter protein 7 (.1) AT3G19930 221 / 7e-67 ATSTP4, STP4 sugar transporter 4 (.1) AT1G11260 219 / 2e-66 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 216 / 4e-65 STP12 sugar transporter protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005870 [exp] 463 / 5e-161 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10005871 [exp] 290 / 2e-92 AT3G47000 908 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001200 [exp] 281 / 2e-84 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10002452 [exp] 254 / 1e-79 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10002450 [exp] 241 / 2e-74 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 241 / 2e-74 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010532 [exp] 240 / 3e-74 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1) Lus10021926 [exp] 231 / 6e-71 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 229 / 1e-69 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042900 [exp] 322 / 2e-105 AT5G26250 577 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 301 / 7e-98 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.010G090000 [exp] 259 / 1e-81 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150800 [exp] 251 / 1e-78 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150700 [exp] 251 / 1e-78 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 236 / 2e-72 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 224 / 8e-68 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.006G189100 [exp] 222 / 2e-67 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.004G033600 [exp] 222 / 3e-67 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 218 / 2e-65 AT1G11260 808 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter CL0015 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001201 pacid=23173063 polypeptide=Lus10001201 locus=Lus10001201.g ID=Lus10001201.BGIv1.0 annot-version=v1.0 ATGAAGACTCATGGGTGGAGGATTTCCTTAGGCGGAGCTACACTTCCTGCTGTCGTTCTTCTCTTGGGGTCGTTCGTAATTGTGGAGACTCCGACGAGTC TTTTGGAGCGTGGGAAGACAGAGAAGGCTCGATCGACTCTACAGAGAATCAGAGGAGTCGATAAAGTCGATAAGGAATTCTCAGAGATTTGTGACGCTGA AGAAATGGCTAAACAGTTTAAACACCCGTTTAGGACCTCAAGAAAAGACGGAGAGAATGCGTCTCTTTTCTCAGCTGTGATGATCAATACCATCAAACCG ATTTGCACAGTGGTTGCGATTTTGATTGTGGATAGGTTTGGGAGAAGGGCTTTGCTTATTGAAGCTTCCACTCAGACGTTCATCGCTGAGTGTGCAATTG GGGTGATTCTGGCCGTACACCTGCATACAACGACTGTGATGCCAAGGTATTATGCAGTGGCGGTGATATGCTTGATATGTGTGTTCTTGTCCGGATTTGC TTGGTCATGGGGTCCATTGGGATGGTTAATTCCAAGTGAAATATACCCGTTGGAGACTAGAACTGCTGGTTTCTTCTTCTCGGTGAGCATGAACATGCTG TGGACATTCATAATAGCTCATACGTTCCTGATGATGTTGTGCTACATGCGAGCGAGGACCTTCTTCTTCTTTACGGTGTGTCTGTTTGTGATGGGGACTT TTGCACTAGTGTTTCTACCAGAGACGAAAGGAGTCCCTATTGATGAGATGGTGGAGAAGGAAAGCAGTGGGAGAGAACACAGAATCATCTTTGAGGAATA TCCTTCACCGGAAACCTTAGCACGTAAGGACTTCTCCTATGCCATTGTAGCCATCGGTGAACCTCCATATGCAGAATTTACAGGGGACGATCCGGAGCCA GTTATCCAAAATGAAGGACGTGAGATTGTCAGCTTGGTAGCTGACAGAATCCCCACACTGGCGATTCTTGTATCTGGAAGACCACTAGTCCTAGAACCAC ATTTACTGGAGAAGATAGAAGCACTTGTTGCTGCCTGGTTGCCTGGAACTGAAGGGGATGGGATTGCGGATGTTATCTTTGGTGGAGAAGATTTTAAGGG ACAGTTGCCAGTGACATGGTTCAAGAAGGTTGATCAGTTGCCAATGAAATTCGACGGTGGGATTAACAATGTATATGACCCTCTGTTTCTTCTTGGGTTT GGACTTGCTTACAAATGA
AA sequence Show only first row Show all	>Lus10001201 pacid=23173063 polypeptide=Lus10001201 locus=Lus10001201.g ID=Lus10001201.BGIv1.0 annot-version=v1.0 MKTHGWRISLGGATLPAVVLLLGSFVIVETPTSLLERGKTEKARSTLQRIRGVDKVDKEFSEICDAEEMAKQFKHPFRTSRKDGENASLFSAVMINTIKP ICTVVAILIVDRFGRRALLIEASTQTFIAECAIGVILAVHLHTTTVMPRYYAVAVICLICVFLSGFAWSWGPLGWLIPSEIYPLETRTAGFFFSVSMNML WTFIIAHTFLMMLCYMRARTFFFFTVCLFVMGTFALVFLPETKGVPIDEMVEKESSGREHRIIFEEYPSPETLARKDFSYAIVAIGEPPYAEFTGDDPEP VIQNEGREIVSLVADRIPTLAILVSGRPLVLEPHLLEKIEALVAAWLPGTEGDGIADVIFGGEDFKGQLPVTWFKKVDQLPMKFDGGINNVYDPLFLLGF GLAYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10001201 [exp]	0	1
AT2G46080			unknown protein		Lus10036385 [exp]	3.2	0.8933
AT1G25275			unknown protein		Lus10006792 [exp]	5.0	0.8629
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	6.8	0.8828
AT1G79390			unknown protein		Lus10001838 [exp]	7.3	0.8340
AT4G25670			unknown protein		Lus10039276 [exp]	11.9	0.8725
AT5G35080			unknown protein		Lus10039972 [exp]	12.7	0.8604
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	14.0	0.8596
AT1G13870		DRL1, AtKTI12	DEFORMED ROOTS AND LEAVES 1, c...		Lus10036884 [exp]	14.3	0.8081
AT5G26250			Major facilitator superfamily ...		Lus10005870 [exp]	15.3	0.7936
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	16.1	0.8674

Compare expression of checked genes

Lus10001201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.