Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 129 / 7e-30 unknown protein AT2G29620 125 / 5e-29 unknown protein AT1G07330 119 / 4e-27 unknown protein AT5G58880 86 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005869 [exp] 2008 / 0 AT5G58880 144 / 6e-35 unknown protein Lus10020367 [exp] 91 / 2e-18 AT5G17910 250 / 2e-73 unknown protein Lus10009543 [exp] 89 / 6e-18 AT2G29620 249 / 1e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249000 [exp] 162 / 7e-40 AT5G17910 134 / 2e-31 unknown protein Potri.009G043000 [exp] 158 / 1e-38 AT2G29620 169 / 6e-43 unknown protein Potri.013G068800 [exp] 138 / 1e-32 AT5G17910 437 / 3e-129 unknown protein Potri.019G044500 [exp] 134 / 2e-31 AT5G17910 296 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001202 pacid=23173051 polypeptide=Lus10001202 locus=Lus10001202.g ID=Lus10001202.BGIv1.0 annot-version=v1.0 ATGACGAGTTTGTATCTAAAGAGCATCGTCCTCAAGATCTGTAAATCTTCTTTTATAAATGTGTGTAAATATGTAAGGCACTACCCAATTGTGTCTGCAA TTTCATTCCTACCGGCTCTCCTATACATCTTCATCCCTTCAGTTGTCGTCTTCTTCATCTATCTTTCACCGATATTCATCCTTGCTGCCGCCACACGTTG TTACCGTTCCCGCTCAAAAGCTCAGGACGCCAAGAGAAATGGAATCAAACAAGAGAAGAAGATTGAGAAGAAGCTATCCACGTTGGGGAAGTCCAAGTCT GTGGCCAATGATCGGCCAACAGTCACTAAACCGACCCGATCAATGTCTCAAAGGCGGAACAAGGAAAAGTTCTTCGTTGAGGCTGACCCGATAATTGCGC ATGATGTCAAAGCTAGCATCAGCGATTTCCTTAGAGAGGTGAGGAATAAAAGGGATGAAGAATCGGAGACAACGAAAGGAAAACATGATCAAGAAGGTGG AGGATCGTGCTTCCTCACCAAGAATAGGGATCCAAATCCCAAACTTGAAACTGACCCACCGCTGGTTAACGATCAAAGAGGAGACAACGACGGAGGAGGA GAAGACTCCGGAAGCTCGGAAGATGATAAGGCGGCGGTGGAGTGGAACGAAGACGATCAGAAGAATTTGATGGATTTAGGAATTTCAGAGATGGAGCGGA ATAAGCGGCTGGAGAGCTTAATCGCAAGGAGAAGGTCGAGGAAGTTTTATAAGATGAACAGTGAGAAAGGGATGACTGTGGATATTGATCTCGTTGGACC TTGTTCATCTCCTTCTGTTGCTATGTCAGAGATTGTTTCTCCTGTATTAATCTCAACTAGTAGAATTGATGCCCATTTGTTACTCCACGATTCTTCACGG GACGATCAATTTCCTGGCTCTGCACCGTCGATTCTGCTGCCAGGAAAAAATCCATTTGATCTCCCTTATGATCCACACGAAGAGAAGCCTGATCTCATGG CAGACAGCTTCCAACAAGAGTTCTCCATTACTCCCCATAAGGAAATGTGTAGGCATGAAAGCTTCTCCCTCGGGCATACAACCAGAACTAAAATTCTTTC GGGCACCATTAATGAACAAAAACCACCACGATTGTCTGATCCAATTGCTCGCACAGTTAGCATAACTGACTTGGTGGTTACTGATCTTCTTGAACCAAGA CAGCCATATGATTCTGGTCCAGGTGAAATAATAGAATTCATAAGTGATCATAGTGTGAGAAGGGATGAGAAGAACATTCCTAAAGATGCTAACGATCAAG GATCTGAAATCTCACCAAATCCACGACCGCCTTCTCTCCCGCGGCCAATTCCTAAGGCTGCAAGTGCAAACGATCTGTCCAACGAAGCTAGCTTATCGAT AATTCACAACATGAGAGTCGACGAGCATTACCAGAATAGAGGGACATGGCATACACCGACCAACTCAGTTGCATCGGATTTGCAAGTGGAGGTGTCAGAA GTCGGATCTCCTACGTCTACTGTTTCGGATGTTGATGATGATCGTGACAGAGGGTCACTGACTTATGATGGGGACATTGAGAAAGAATTTAATTCTGGGA ATGAGGAATTATGGGGGTTATCTCCGCATGCACCAAGGATTGGAAAACACGAGTTGGCTCTAAGGTTTCTAAACGAGGCTAGTGAGGAAGGTATGAGAGA GGCAAGATTTGCAGACAATGTACAAGATTTTGGCGCAGAGATTATAAGTAATATCAAACCACTAGAAAAGGAAGAAGAAGTTGTAGCAGAACTCATAACT AGACATAGCAAAAATCACCTTATATCTGATTTACAAGAATCAAAGGAAATATCAGACCCTCTACAAGTTGATGTTGAAGAGGAGACGAAGAAGAATAATG ACATGATGGACGGAGATATTGAAAAGATTAATAATACAGAAGAATTGAAATCGATTGAAAGACAAACCATCTATGAGATTGGGGATGATCGATCCAAAAC AGTCGAGACAATTGTAACTGAACCCAGTAGTCATTTTGAGAGGGAATTATTGCAGGGTCCAGAAAACTTAGCTGACGTTATAGTTAAGAGAAGCGAGCAA ATAGATAGTGCTTTAAGCTCAACAAGCAACTTAGTCGGTGGAGTACTTGAACCATTGCACCATATTGATATTGGCATAAGGGATGATAAGGTTGTTCCAA CTCTGCCAAATGAAGCTTCAAGGTTCGCTGAAGATGTTAAAGAATCAGGAGGAGGCAATATGAGGGATGGGAATGTTCAACAAATCTTGACACCAAGTGA AACTCAATCGACAAATTCAGTCGTGAATGACAGAGTTATAGTGACAAGTCCAAGCTATATGTCCCAAACCTTGTCATCTTTACAACCAGAAGTCGCAATT GACCAAGATCTCACCGACTTGAACTCCACACTATCTCTTGTATCTGTTCTAATGGACATGAACCAAGGAGAAGCCCAAACAACCCTGTCACCTATCAACC AACAGGTGCACGACATGGAAGAGTCAGCGTATCATGTGGATCAAACTCCAATGAACCATAATGAACAACATCAACCATTAGAAAGTTCCAATGGTGAGAT CAATTCACGTGAGAGTTTGTCAAGGGTCGATGATCAAGATCGCAACGAAATGGAGTTTACTCCTCAACATTGGAATGGTGAAGATCATAATGTTCATGGG AAAGAGAAAAATTTAACTGAGACCCTACTGAATGGTGATCCAATAGTGAAGCGTGAAACCCACGTCAAAGAAGAAGTGCCAAAATCATTTGAGGATGTTA CTTGTAGTCCTAATCCCTATGGACACTTTGAAGGTGCCACTTCCAGTTCCTCGAAGAGTGAAGACAACCAATACCACGTTAATCTTGAAGAGAAGGAAAA CGAAAGACTTATAGAAGAGGCAATAGGAGAAAGGAATAACAATGACAATGTGGTCGATGAAGGAAACGAAGTTAAATCATTGTCAATCACAAAAGAAGCC ATTGCAGAACCAGAAATTTTACATAACATGTCGGCTCGATCAGATGACCTTAAAATGGAATCATTATCAACATTGAAGCAAGAACTCATTATGGAGCTAC CAAACCCAAGTAATTTGGTTCCGTCCAATGACCTTCAAGGCGATGTCATTGAGTCAATCAGACAAGACGCCGCAGCTGGAATAGTGAAACCAAGTGACTT AAAACAAACCCTTGAAGGGGAATCCTTGTCCTCAATCAGACGAGAAGCCATGGCAGAGTCACTAAAAGAAGTTGATATGATTTCCAGAAAGTCTCTTCTT GACGGCAATGAATCCATGTCATCAATTAAAGAACCAATAACCTCTATGGAACAATCAAAGGCGGTGGTCGACTTGGTTCCTCTCATGGCAGCTGGAGATT ATTCTTTAGCATCAGTCCAACTAAAAGCCTTAGAGCCGTTGAAAACAGATGACTTGATGCCTTCATTATCCCACGGAGATGAATCTTTGTCGTCAATCAA ACAAGGTGTCGCTGTGGAAGTACATGTACCAGCTGATTCGATGTCCTCTATCGAGAGCGTTAAAGTTGCACCGATCCAGACTGAAGTAGTTCATATTGAA ACTTCTAAACCAATTGTTGAAGATGAAACCCCAAGTTTAAGCAAGAAAATTTCTCCAGAAAAGGTTCAACCAGCCGATATGGAGATAGAACATAATGTAG CACCTGTGAAGATTGCCAAAGATAAAATCAACGTTGATCATAACCATTTTGAGGATGAAATGGACAATAACCAAAACTCCAAGGTCATTGAGGACGATGA AGAAGATGAAGGTGCATTCCCAACTGCAAATAGACAAAACGACCATCTCGTAACAAAGTCAGGTCAACAAGTTGATCATCATGAGTCAAAGAGAACGATA GAAAACAAAAACAACGACACAATGATTGTTCCTCCGCTACAACCAGGAGATGAAAGGAGCGACCACCACAATTTTGAAGACAAAGAGTGA
AA sequence Show only first row Show all	>Lus10001202 pacid=23173051 polypeptide=Lus10001202 locus=Lus10001202.g ID=Lus10001202.BGIv1.0 annot-version=v1.0 MTSLYLKSIVLKICKSSFINVCKYVRHYPIVSAISFLPALLYIFIPSVVVFFIYLSPIFILAAATRCYRSRSKAQDAKRNGIKQEKKIEKKLSTLGKSKS VANDRPTVTKPTRSMSQRRNKEKFFVEADPIIAHDVKASISDFLREVRNKRDEESETTKGKHDQEGGGSCFLTKNRDPNPKLETDPPLVNDQRGDNDGGG EDSGSSEDDKAAVEWNEDDQKNLMDLGISEMERNKRLESLIARRRSRKFYKMNSEKGMTVDIDLVGPCSSPSVAMSEIVSPVLISTSRIDAHLLLHDSSR DDQFPGSAPSILLPGKNPFDLPYDPHEEKPDLMADSFQQEFSITPHKEMCRHESFSLGHTTRTKILSGTINEQKPPRLSDPIARTVSITDLVVTDLLEPR QPYDSGPGEIIEFISDHSVRRDEKNIPKDANDQGSEISPNPRPPSLPRPIPKAASANDLSNEASLSIIHNMRVDEHYQNRGTWHTPTNSVASDLQVEVSE VGSPTSTVSDVDDDRDRGSLTYDGDIEKEFNSGNEELWGLSPHAPRIGKHELALRFLNEASEEGMREARFADNVQDFGAEIISNIKPLEKEEEVVAELIT RHSKNHLISDLQESKEISDPLQVDVEEETKKNNDMMDGDIEKINNTEELKSIERQTIYEIGDDRSKTVETIVTEPSSHFERELLQGPENLADVIVKRSEQ IDSALSSTSNLVGGVLEPLHHIDIGIRDDKVVPTLPNEASRFAEDVKESGGGNMRDGNVQQILTPSETQSTNSVVNDRVIVTSPSYMSQTLSSLQPEVAI DQDLTDLNSTLSLVSVLMDMNQGEAQTTLSPINQQVHDMEESAYHVDQTPMNHNEQHQPLESSNGEINSRESLSRVDDQDRNEMEFTPQHWNGEDHNVHG KEKNLTETLLNGDPIVKRETHVKEEVPKSFEDVTCSPNPYGHFEGATSSSSKSEDNQYHVNLEEKENERLIEEAIGERNNNDNVVDEGNEVKSLSITKEA IAEPEILHNMSARSDDLKMESLSTLKQELIMELPNPSNLVPSNDLQGDVIESIRQDAAAGIVKPSDLKQTLEGESLSSIRREAMAESLKEVDMISRKSLL DGNESMSSIKEPITSMEQSKAVVDLVPLMAAGDYSLASVQLKALEPLKTDDLMPSLSHGDESLSSIKQGVAVEVHVPADSMSSIESVKVAPIQTEVVHIE TSKPIVEDETPSLSKKISPEKVQPADMEIEHNVAPVKIAKDKINVDHNHFEDEMDNNQNSKVIEDDEEDEGAFPTANRQNDHLVTKSGQQVDHHESKRTI ENKNNDTMIVPPLQPGDERSDHHNFEDKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29620			unknown protein		Lus10001202 [exp]	0	1
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040100 [exp]	8.4	0.5967
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	11.4	0.5780
					Lus10002077 [exp]	25.0	0.4596
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	29.7	0.5375
					Lus10006254 [exp]	42.7	0.5110
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10037409 [exp]	47.5	0.5158
					Lus10017767 [exp]	55.4	0.5033
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10026935 [exp]	58.9	0.4485
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	64.8	0.4900
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10015299 [exp]	67.4	0.4491

Compare expression of checked genes

Lus10001202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.