Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29670 417 / 1e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 400 / 7e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 318 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 84 / 8e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 82 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 71 / 4e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 69 / 6e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 66 / 1e-11 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005863 [exp] 951 / 0 AT2G29670 462 / 6e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018221 [exp] 594 / 0 AT2G29670 486 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040683 [exp] 590 / 0 AT2G29670 474 / 5e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025981 [exp] 109 / 2e-25 AT2G29670 146 / 8e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043203 [exp] 82 / 9e-19 AT2G29670 102 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 83 / 3e-17 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 84 / 4e-17 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 82 / 9e-17 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 82 / 3e-16 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250100 [exp] 550 / 0 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 520 / 5e-180 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G191600 [exp] 304 / 1e-96 AT2G29670 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 94 / 2e-20 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 86 / 4e-18 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 84 / 1e-17 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 81 / 2e-16 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 79 / 2e-15 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 77 / 5e-15 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 76 / 5e-15 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001206 pacid=23173065 polypeptide=Lus10001206 locus=Lus10001206.g ID=Lus10001206.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCTACGACTTGTTTTCAGTGGTCGAAGCCAATCGTACCTCATTTCCCGTCGTCCCATCGAACCTTAACCTCTGCAATCTCGGCGCCTTCAT CATTCTGCCATTACGTGCATAGACTAGACAGTTTGGCTCTGTTTGGAGCTTCATCATCAATGGCTTACAGCGCCGGTTCATCCGTCTATGCCAAGCCCAG AAGAGCACGGGCGTTGAAAAGGGCCTGCAGTGCAGGCTCCAACGCCTTCTCCGATGAGGAATTTTCCAAGGAAATCCAAGAGTTGGCTCTCAGATTCCAA AACTCAATCAATGATGATGATTATGAAGATGAAGAAAGCGATGATTCAGCAGATTTGGAATTTGCTGCTGGTTTCCATTCGGAAGTTGGAATTAATAGCT GTGATTCAACCATGGAAGAATATTCTGCAACTCTTGATCATGATCAGAGGCGATTCCCTCTTGCATCGGAGGAGCCTCCATGGCCGAAAGATTGGCCTGA GGCACACAATATTATTCCGGCGATCATTGAGCGGAATATAAACAGCGTGGATATCCCATTATCACTCCGTATCATAAAACGAAAAATGCAATGGCAAGTA GGATTCAAGGAGGCAGGAGAATCCGCATGTTGTTCAGTGAAGAAGGCTTTCTCATCTATGGTGTTTATAATCCGAGAGCTCCAAAGCTACACATTACAAA TGAGGGAGCTAATCTTCACGAAAGATTTACAAGGAGTTCTAGCCCGGGTTCAAAAGGAGATGCACGATTCCTTTGTTTGGTTGTTTCAGCAGGTGTTTTC CCACACTCCGACTCTCATGGTCTCCGTCATGATTCTCCTAGCGAATTTCACCGTCTACTCCATGGGCACGCAGTACGCAATAGCCACGGTTCCCACAACA ACGGTGAGAGTGTCGGTTCTCGACAATACAGAGCACAAGAATACCAAGAAGTTCCATTCATCGGTGGTGAAGACATTTCCTTTGATGTCATCTCCGAAAC CCGTTGGGGAGATTAATGGCGGGGGTGGAGGGAACATTCGACCGGTGGGGAGCGGGACAGAAGAGGATGGTTCGATTCATGACTCGGACGAGTTGAGAAC GATAGTTCCGGATGATGCATTAGAGTTATCGGCATTAGGGACAGGGCAGGAGGCAGAGCAAGTGAATGAAGAAGATGCTTCAAAGCTGTGGAATAGGATA GTAGATGAAGCATCAAATATACAGGGTACTGTAAAGATTGATGAGGAGGTGATCAAGAGATTGGTATCTCCAATTGAAGCGAGAATCGAATCGGAGGATA ACTATGGAGATGATTATCTGCAGACAGAGCTGCTGTACCTAAAAGCAGTGGGGGAAGAGCCTAACAACCCTCTACTGCTCGCCAACTACGCTCAGTTCCT ATACCTTATCTCCCATGATTACGACAGGGCGGAAGAATACTTTAAGAGGGCAGTGGGGACGGAGCAGGCTGATGCAGAGGCGTTAAGCAAGTACGCAACT TTTCTATGGAAAGTGAGAAACGATGAGGCGGCGGCTGAGGAGACTTTCTTGGAAGCGATGGCGGTGAACCCGGACAGTGCTTACTTCCCTGCTACTTATG CGGCCTTCTTATGGAAAACCGGTGGAGAGGATACTTGTTTCCCTCTGGGTTCCCTGGATACTACTCAGCAAGTGTAA
AA sequence Show only first row Show all	>Lus10001206 pacid=23173065 polypeptide=Lus10001206 locus=Lus10001206.g ID=Lus10001206.BGIv1.0 annot-version=v1.0 MEAATTCFQWSKPIVPHFPSSHRTLTSAISAPSSFCHYVHRLDSLALFGASSSMAYSAGSSVYAKPRRARALKRACSAGSNAFSDEEFSKEIQELALRFQ NSINDDDYEDEESDDSADLEFAAGFHSEVGINSCDSTMEEYSATLDHDQRRFPLASEEPPWPKDWPEAHNIIPAIIERNINSVDIPLSLRIIKRKMQWQV GFKEAGESACCSVKKAFSSMVFIIRELQSYTLQMRELIFTKDLQGVLARVQKEMHDSFVWLFQQVFSHTPTLMVSVMILLANFTVYSMGTQYAIATVPTT TVRVSVLDNTEHKNTKKFHSSVVKTFPLMSSPKPVGEINGGGGGNIRPVGSGTEEDGSIHDSDELRTIVPDDALELSALGTGQEAEQVNEEDASKLWNRI VDEASNIQGTVKIDEEVIKRLVSPIEARIESEDNYGDDYLQTELLYLKAVGEEPNNPLLLANYAQFLYLISHDYDRAEEYFKRAVGTEQADAEALSKYAT FLWKVRNDEAAAEETFLEAMAVNPDSAYFPATYAAFLWKTGGEDTCFPLGSLDTTQQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07280			Tetratricopeptide repeat (TPR)...		Lus10001206 [exp]	0	1
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039468 [exp]	3.5	0.9403
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	3.6	0.9485
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039449 [exp]	4.2	0.9426
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	4.9	0.9264
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	5.7	0.9297
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	6.0	0.9175
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10005863 [exp]	6.5	0.9180
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	11.0	0.9276
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	11.2	0.9078
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10015245 [exp]	13.3	0.8676

Compare expression of checked genes

Lus10001206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.