Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07230 215 / 2e-68 NPC1 non-specific phospholipase C1 (.1) AT2G26870 159 / 3e-47 NPC2 non-specific phospholipase C2 (.1) AT3G03520 154 / 4e-45 NPC3 non-specific phospholipase C3 (.1) AT3G48610 152 / 1e-44 NPC6 non-specific phospholipase C6 (.1) AT3G03530 146 / 3e-42 NPC4 non-specific phospholipase C4 (.1) AT3G03540 135 / 5e-38 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005860 [exp] 247 / 9e-81 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10040678 [exp] 233 / 2e-75 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10036038 [exp] 160 / 1e-49 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10025726 [exp] 151 / 3e-44 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10035935 [exp] 150 / 8e-44 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10028492 [exp] 138 / 4e-39 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10009153 [exp] 134 / 7e-38 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10018228 [exp] 78 / 1e-19 AT1G07230 109 / 1e-29 non-specific phospholipase C1 (.1) Lus10009690 [exp] 40 / 0.0002 AT2G26870 258 / 9e-82 non-specific phospholipase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250500 [exp] 214 / 3e-68 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 208 / 8e-66 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.009G069900 [exp] 170 / 3e-51 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.015G097900 [exp] 161 / 7e-48 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.001G275500 [exp] 161 / 7e-48 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 156 / 3e-46 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.013G073600 [exp] 154 / 2e-45 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10001208 pacid=23173058 polypeptide=Lus10001208 locus=Lus10001208.g ID=Lus10001208.BGIv1.0 annot-version=v1.0 ATGGCTCTGTTGATCACCTACGATGGACACGGCGGATTCTACGACCACGTTTCGACTCCGGTCTCTGGCGTCCCCAGTCCCGATGGGATCGTCGGTCCTG ACCCGTTTTACTTCGAATTCGACCGATTGGGTGTCCGTGTCCCGACTTTCTTGATCTCTCCCTGGATTGAAAAGGGTACAGTGATCCATGAGCCTAATGG TCCAACACCGACTTCTCAGTTTGAGCATTCTTCAGTGCCTGCCACTTCATTGAGGCCAGTTGGAGCGGAACCAGATGTGAAACTCTCAGAGTTCCAAATG GAACTAGTACAGCTTGCATCCCAGCTCAATGGCGACTATGTACTCAACACTTATCCAGACATCGGCAAGACCATGACGGTTGCCGAAACAAAAAGGTACA ACGAATCCTCCATCTCACGATGA
AA sequence Show only first row Show all	>Lus10001208 pacid=23173058 polypeptide=Lus10001208 locus=Lus10001208.g ID=Lus10001208.BGIv1.0 annot-version=v1.0 MALLITYDGHGGFYDHVSTPVSGVPSPDGIVGPDPFYFEFDRLGVRVPTFLISPWIEKGTVIHEPNGPTPTSQFEHSSVPATSLRPVGAEPDVKLSEFQM ELVQLASQLNGDYVLNTYPDIGKTMTVAETKRYNESSISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10001208 [exp]	0	1
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	6.3	0.8409
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	10.1	0.8300
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10001207 [exp]	17.3	0.8090
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	18.9	0.8356
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	19.3	0.7576
					Lus10027774 [exp]	23.7	0.7938
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10009858 [exp]	27.0	0.7524
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10028332 [exp]	29.0	0.8029
AT5G47710			Calcium-dependent lipid-bindin...		Lus10038745 [exp]	30.1	0.6903
					Lus10008155 [exp]	32.2	0.7792

Compare expression of checked genes

Lus10001208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.