Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47160 369 / 5e-131 RING/U-box superfamily protein (.1.2) AT5G58787 344 / 4e-121 RING/U-box superfamily protein (.1.2) AT5G01520 328 / 5e-115 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT1G24440 211 / 1e-68 RING/U-box superfamily protein (.1) AT1G13195 207 / 5e-67 RING/U-box superfamily protein (.1.2) AT5G41350 47 / 4e-06 RING/U-box superfamily protein (.1) AT5G37250 43 / 5e-05 RING/U-box superfamily protein (.1) AT3G20395 42 / 0.0001 RING/U-box superfamily protein (.1) AT4G23450 42 / 0.0001 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G37270 42 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005859 [exp] 460 / 4e-167 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 345 / 2e-121 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 345 / 3e-121 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 224 / 2e-73 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 223 / 4e-73 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 221 / 1e-72 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 218 / 3e-71 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 216 / 3e-70 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006253 [exp] 214 / 9e-70 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045400 [exp] 380 / 1e-135 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 366 / 6e-130 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 361 / 7e-128 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 357 / 3e-126 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 345 / 2e-121 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 338 / 1e-118 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 224 / 1e-73 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 222 / 1e-72 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.010G052700 [exp] 220 / 4e-72 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 211 / 1e-68 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001209 pacid=23173060 polypeptide=Lus10001209 locus=Lus10001209.g ID=Lus10001209.BGIv1.0 annot-version=v1.0 ATGGTTAAGTCTTCGTTTAAAGATTCGCTCAAAGCTCTTGAAGCTGACATCCAACACGCCAACACTCTGGCTTTGGATTATCCGAGGGAGAACGATGGAG CACGTATGCAGATGAGATTATCTTACAGTCCAGCTGCCCAGTTTTTCATGTTTCTTGTTCAGTGGACTGATTGTCATCTAGCTGGAACCTTTGGCTTGCT CCGGATTCTTATTTATATGACCTATGATGATGGAAAGACTACTATGTCTGTGTACGAAAGACGAGCCAGCCTCAAAGAATTCTATGGTGTGATATTTCCT TCCTTGTTGCAACTTCAGAGAGGGATAACAGAGTTGGAAGACAGGAAACAGATTGAGGTTTGCAACAGCAGCAAGTACACAAGAGAAGGGGAAATGTCAG AAATGTCTCGAACTGACGTGGAAAGAGAAGAGGAATGCGGGATTTGTATGGAGATGAACCCGAAATTCGTGTTGCCTGATTGCAATCACTCAATGTGTCT CAAGTGTTTCCGCGACTGGCGTGGGAGGTCGGAGTCGTGTCCGTTCTGTCGAGACAGCCTGAAGAGGACAAACTCCGGGGATCTTTGGATATACACAGAT AGCTCTGAAATAGTTGACATGCCTTTTATTTTCAGGGAGAACTGCAAGAGGCTGTTCATGTACATTGATAAGCTGCCACTCATTGTTCCAGATCATCTTT ATTCCATGTGA
AA sequence Show only first row Show all	>Lus10001209 pacid=23173060 polypeptide=Lus10001209 locus=Lus10001209.g ID=Lus10001209.BGIv1.0 annot-version=v1.0 MVKSSFKDSLKALEADIQHANTLALDYPRENDGARMQMRLSYSPAAQFFMFLVQWTDCHLAGTFGLLRILIYMTYDDGKTTMSVYERRASLKEFYGVIFP SLLQLQRGITELEDRKQIEVCNSSKYTREGEMSEMSRTDVEREEECGICMEMNPKFVLPDCNHSMCLKCFRDWRGRSESCPFCRDSLKRTNSGDLWIYTD SSEIVDMPFIFRENCKRLFMYIDKLPLIVPDHLYSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	0	1
					Lus10022017 [exp]	1.0	0.9542
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	2.0	0.9344
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	2.0	0.9397
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	3.9	0.9342
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	3.9	0.9365
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	4.5	0.9144
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	5.8	0.9173
AT1G73350			unknown protein		Lus10031897 [exp]	6.2	0.9195
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	6.5	0.9333
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10009638 [exp]	6.7	0.9183

Compare expression of checked genes

Lus10001209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.