Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 180 / 3e-54 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 176 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 171 / 1e-50 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 160 / 3e-46 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 148 / 3e-42 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 142 / 8e-40 ATSEH soluble epoxide hydrolase (.1) AT2G26750 141 / 2e-39 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 51 / 6e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005858 [exp] 580 / 0 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 384 / 3e-134 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 377 / 1e-131 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 376 / 3e-131 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 375 / 1e-130 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 357 / 8e-124 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 345 / 7e-119 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 184 / 1e-55 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 181 / 1e-54 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048000 [exp] 419 / 4e-148 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 343 / 3e-118 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 340 / 4e-117 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 318 / 2e-108 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 194 / 5e-60 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 194 / 7e-60 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 187 / 3e-57 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 173 / 6e-52 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 164 / 4e-48 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 162 / 3e-47 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10001210 pacid=23173067 polypeptide=Lus10001210 locus=Lus10001210.g ID=Lus10001210.BGIv1.0 annot-version=v1.0 ATGGAGCAAATCAACCACAAGTTCGTCGACGTCGGAGCAGGATTAAAGCTCCATGTCGCCGACGTCGGAACAGGGGACAAAGTAATCCTCCTGCTCCACG GATTCCCCGAGATATGGTACTCCTGGCGGCACCAGATGATCGCCCTATCCAACGCGGGTTACCGGGCCATCGCTCCGGACTACAGAGGTTACGGGTTGTC TGACCCGCCTCCGAAGCCCCAAGAAGCCACCTTCGCCGATTTTGCCGCCGATATGGCTGCCGTCCTAGATTCCCTTGGAATTCCGAAGGTCGTCGTGGTC GCCAAGGACTTCGGTGCTTACGTGGCGTCTCGATTCTCCGTTTTTTACCCGGAAAGGATGCTTGGACTCGTCACTATGGGGATACCATACACCCCGCCGG GTCCCGGCGCCTCTGCTATCATGGCTCTGCTTCCCGAAGGGTTCTATGCTCGCCGGTGGATGGAGCATGGTAGAGCTGAAGCTGATTTCGGCCGATTTGA TGCGAAGACGGTGGTGAGGAAGATTTATATCCTCTTCGCCGGAGAGGAATTGCCAACGGCGGCTGAAAACCAAGAAATTTTTGATTTGGTGGACCCATCG GATCCTCTTCCTTGTTGGTTTGCGGAGGATGATCTTTCCACTTATGGAGCTCTGTACCACAACTCTGGCTTCCATACAGCATTGAAGGTTCCGTACAGAT CAATGGATGAAGCGGCGGACATAGCAGATCCCATGATCAAGGTTCCAGCAATGCTGATTCTCGGTGACAAAGATTATGTAAACAAATCTCCAGGATTCGG GGACTATGCCAACAATGGAGTGAAGCATTTCGTCCAGGACCTGAAAATCGTACATTTGAGTGAAGGAAGCCATTTTGTACAGGAACAATTCCCTGAACAA GTGAATGAGCTTGTACTAGATTTCCTCACAACCAGAATTTGGTCTTGA
AA sequence Show only first row Show all	>Lus10001210 pacid=23173067 polypeptide=Lus10001210 locus=Lus10001210.g ID=Lus10001210.BGIv1.0 annot-version=v1.0 MEQINHKFVDVGAGLKLHVADVGTGDKVILLLHGFPEIWYSWRHQMIALSNAGYRAIAPDYRGYGLSDPPPKPQEATFADFAADMAAVLDSLGIPKVVVV AKDFGAYVASRFSVFYPERMLGLVTMGIPYTPPGPGASAIMALLPEGFYARRWMEHGRAEADFGRFDAKTVVRKIYILFAGEELPTAAENQEIFDLVDPS DPLPCWFAEDDLSTYGALYHNSGFHTALKVPYRSMDEAADIADPMIKVPAMLILGDKDYVNKSPGFGDYANNGVKHFVQDLKIVHLSEGSHFVQEQFPEQ VNELVLDFLTTRIWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	0	1
AT2G18210			unknown protein		Lus10028324 [exp]	1.0	0.9896
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	1.4	0.9822
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	2.8	0.9758
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	3.9	0.9759
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	3.9	0.9750
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	4.2	0.9718
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	4.5	0.9639
					Lus10026081 [exp]	6.9	0.9633
					Lus10008211 [exp]	6.9	0.9498
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	7.2	0.9482

Compare expression of checked genes

Lus10001210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.