Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 347 / 3e-114 Protein kinase superfamily protein (.1) AT1G16670 308 / 3e-99 Protein kinase superfamily protein (.1) AT1G56140 283 / 2e-83 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 281 / 1e-82 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 280 / 3e-82 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 278 / 5e-82 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 272 / 5e-80 Leucine-rich repeat transmembrane protein kinase (.1) AT1G70740 257 / 4e-79 Protein kinase superfamily protein (.1.2) AT1G53430 269 / 2e-78 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 266 / 2e-77 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005856 [exp] 519 / 5e-179 AT3G09010 279 / 6e-89 Protein kinase superfamily protein (.1) Lus10011193 [exp] 506 / 2e-176 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 508 / 5e-176 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10004825 [exp] 333 / 1e-108 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10042460 [exp] 317 / 1e-102 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10002494 [exp] 315 / 2e-101 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10026207 [exp] 313 / 1e-100 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10012849 [exp] 303 / 2e-96 AT4G17020 711 / 0.0 transcription factor-related (.1.2.3) Lus10042851 [exp] 295 / 2e-93 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040200 [exp] 461 / 8e-159 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 450 / 2e-154 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 351 / 9e-116 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 310 / 1e-99 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 306 / 3e-98 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 302 / 8e-96 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 294 / 1e-93 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 287 / 3e-91 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 290 / 5e-86 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G128500 [exp] 273 / 1e-85 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03849 [flax] [poplar] Tfb2 Transcription factor Tfb2 CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001212 pacid=23173061 polypeptide=Lus10001212 locus=Lus10001212.g ID=Lus10001212.BGIv1.0 annot-version=v1.0 ATGCCTCAAGTAAAGATAATTGCGAAGAACTTCATGGACATGGTGGCAGCTCTGCCCGCCATGAAACTCGATGTTCTCTATGAGAACTCATTCATCTGCG AAGCTATTCTCAGGTCACTCCCGCCTCTGGTGAAGAAGTACGTCATTCAAATGCTATACATAGAAGGCTCCGTGACTGCTAAGTTATTGGAAGAGTGGGT ACTTTCCGACGGTTTGACCAAGCACTTGGTCTCCATTGATCGGTTGGTTCAGCTCAGAATCTTAACCGAAGCCGTTGAAAGTATGTTGACGATCGACGTG TCTGTCTGCCTTGTCTGCGGTGACAAACAACCTGCAAGGTTGACAGAAAGGGGTTTCCAGTTTCTGCTAATGGAGACAAATGCTCAACTACGGTATATCA TCAGAGAATACATATCTAATGCAGAGGCATATAATTTGAATACTTTGACTGATGTTCAGTGGAGTGCAATCAAGGACCTTGCCGACTTGGGATTGGTTAA ACTTCAAAAGGGATTTGTTGTAGTGGAAACAAATTTTAAGATGTATGCATACTCAACATCTAGGTTGCACTCTGAAATTCTACGCCTTTTCTCACGGGTT GAGTATCAACTTCCTAACCTTATCGTGGCAGCAATCACGAAGGAAAGCCTGTACAATGCTTATGTAAACGGAATCACAGGAGACCAGCTTTTCTCCAAGC AGATAGTTTCCTTCATGCAGCAGAATGCTCATCCTCGTGTAGCGCAGAAACTACCAACAGTTCCAGAGAATGTCACCGATCTGATAAGGCTGTGGGAAAC AGATCTCAATCGGGTCGAACCGACCATGGCTTACTTCTACGCCGATTTCCTATCTATGGTGAGCACTTCCGACTATAGTCTGCTCCGGGATGTCAACCAC ATTGCATACAGTACACTTCGATCTGCTACAGATGATTTCGATATCAGAAGGAGGATTGGCAGAGGTGGATTTGGAACTGTTTACAAGGGAACTCTGACAA AGAATGGAAGGAAGATAGCTGTGAAAACTCTCTCTGTCCATTCAAAGCAAGGGGTGAAGGAGTTCTTGAACGAGATCAGGGCCATGTCGAAAGCCAAGCA TCCGAATCTCGTGGAGTTGATAGGGTGCTGTATTCATGGAGCTAATCGGATACCAGTCTACGAATTTGTTGAAAACAACAGTCTTGACAGTTGTTTGTTA GGTTCAAGAAATCGAAACGTAAAACTAGACTGGGGGAAACGAGCTGTGATTTGCTTGGGGGTAGCTCGAGGTCTTGCTTATCTCCACGATGAGCTGGCGC CACATATCGTTCATAGAGACATCAAGGCTAGCAATATACTCCTTGACAAAGACTTCACCCCAAAAATCGGAGACTTTGGGCTTGCCAAGCTTTTCCCGGA TGATATCACTCATATCAGCACGAGAATTGCAGGAACCACTGGTTATTTGGCACCAGAATATGCATTGGGTGGCCAATTAACCAAGAAAGCCGACGTGTAT AGCTTTGGGATCCTAGTCCTCGAGATCCTTAGCGGTAGACGTAGTTCAAAGAGTTCCTTGGGTGGCACGCAAAAGCTTCTGCTAGAACAGGCATGGGAGC TGTACGAAGAAGGAAGGCTTCTCGAGCTGGTCGATTCGGACATGGGAGAATCGGTAGAAGAAGAAGCTGTTGTACGATATATGAAAGTAGCCTTCTTATG TACTCAATCTATGGCAAACAGAAGACCGTCGATGAGCCATGTCGTGGAAATGCTGTCTAAGAACATACCACTCAGAGATCAGCTACTCAGTCCACCCGGT TTCTTCCTGGAATCGGACCGTTTCAGTGAACCGGGGTCTGTAAATAAGAAGTCGTATGCTCAATCGTCTGGCCGCCATAGTTCTGTTGCTGTTACAGTTA CAGAAATCACTCCTAGATGA
AA sequence Show only first row Show all	>Lus10001212 pacid=23173061 polypeptide=Lus10001212 locus=Lus10001212.g ID=Lus10001212.BGIv1.0 annot-version=v1.0 MPQVKIIAKNFMDMVAALPAMKLDVLYENSFICEAILRSLPPLVKKYVIQMLYIEGSVTAKLLEEWVLSDGLTKHLVSIDRLVQLRILTEAVESMLTIDV SVCLVCGDKQPARLTERGFQFLLMETNAQLRYIIREYISNAEAYNLNTLTDVQWSAIKDLADLGLVKLQKGFVVVETNFKMYAYSTSRLHSEILRLFSRV EYQLPNLIVAAITKESLYNAYVNGITGDQLFSKQIVSFMQQNAHPRVAQKLPTVPENVTDLIRLWETDLNRVEPTMAYFYADFLSMVSTSDYSLLRDVNH IAYSTLRSATDDFDIRRRIGRGGFGTVYKGTLTKNGRKIAVKTLSVHSKQGVKEFLNEIRAMSKAKHPNLVELIGCCIHGANRIPVYEFVENNSLDSCLL GSRNRNVKLDWGKRAVICLGVARGLAYLHDELAPHIVHRDIKASNILLDKDFTPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVY SFGILVLEILSGRRSSKSSLGGTQKLLLEQAWELYEEGRLLELVDSDMGESVEEEAVVRYMKVAFLCTQSMANRRPSMSHVVEMLSKNIPLRDQLLSPPG FFLESDRFSEPGSVNKKSYAQSSGRHSSVAVTVTEITPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09010			Protein kinase superfamily pro...		Lus10001212 [exp]	0	1
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	14.2	0.9174
AT5G49525			unknown protein		Lus10017078 [exp]	15.7	0.9163
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	19.0	0.9127
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032414 [exp]	19.7	0.9060
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	28.2	0.9120
AT2G36780			UDP-Glycosyltransferase superf...		Lus10016268 [exp]	31.9	0.8942
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	33.4	0.8862
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	33.9	0.9043
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	35.2	0.9105
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	36.6	0.9112

Compare expression of checked genes

Lus10001212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.