Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 250 / 4e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 243 / 3e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G60770 241 / 9e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 233 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 224 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 214 / 4e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 206 / 3e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 186 / 8e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 174 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005855 [exp] 967 / 0 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 798 / 0 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 428 / 4e-146 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 258 / 1e-79 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 250 / 4e-77 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 244 / 2e-74 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016229 [exp] 219 / 3e-66 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009787 [exp] 216 / 9e-64 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 216 / 1e-63 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042500 [exp] 610 / 0 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 587 / 0 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 503 / 8e-176 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063300 [exp] 286 / 9e-91 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 283 / 4e-90 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 266 / 8e-83 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 262 / 1e-81 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G079600 [exp] 250 / 4e-77 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G133000 [exp] 248 / 1e-76 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G157400 [exp] 248 / 2e-76 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001213 pacid=23173048 polypeptide=Lus10001213 locus=Lus10001213.g ID=Lus10001213.BGIv1.0 annot-version=v1.0 ATGAACTCCAAGCTAGTTTTCAGAGCTCTAACGCAAGCTCAGAATTCGATCATCTCCCGATCCTATCACGTCGCCAAAGGAGACAGAACCACTCTCTATT CGAAGATCAGCCCCCTCGGGAATCCAGGCAACAGTGTCTCAGCCGAGCTCGATGAATGGGTCAAGACCGGCCAAAAGGTCCGGTTCACTGAGCTCCAGCG GATCATTCAAGATCTCCGCAAGAGAAGGCGCTTCTCTCAGGCTTTAGAGGTTTCCGAATGGATGAGTAAATCGGGGACTGTAGTATGCTCACCAGCTGAA CATGCGATCCGGATCGATCTGATAGGGAAGGTTAAGGGATTCGAGTGTGCGGAGGATTACTTCAACACTCTTAGGGACATTGATAAAACTCACAAGACCT ATGGAGCTCTGCTCAATTGCTACGTTCGTCAGAAGCAGATGGATAAGTCGATTTCTCACATACAGAAAATGAAGGACCTTGGGTTTGCTTCGTCACCCAT TGCTTACAACGACATTATGTGTCTGTACACGAATCTTGGCCAGCACGAGAAGGTACCTTCCGTGTTAGCCGAGATGAAGGCTAGCAATGTCTCCCCGGAC AACTACAGCTACAGGATCTGCATCACATCTTATGGTGTAAGATCCGAAATAGAGGAAATGGACAAGATTTTGCATGAGATGGAACAAGATTCCAACATTG TGATGGATTGGAATACTTACACCGTAGTTGCCAACTTCTACATCAAGGCCGGTCTTCGTGAGAAAGCCGTGGAAACTTTGAAGAAGGCGGAGGAGGTACT CGAATGGAAAGACGGTACTGGGTTTAACCATCTGATAACACTGAATGCAGCTCTGGGGAATGTCGATGAAGTATTGAGATTGTGGAAGCTGGAGAAAGCT CGATGTAAAAGGTGCATCAACAAAGATTACATAGTTGTGTTGGAATCGCTGATGAAGCTCAAGGAGGCAGGCCATGCCGAGAAGGTCTTGAAGGAATGGG AATCGAGTGGGAACTGTCACGATTTCAGCGTTCCGAATGTTGTGGTGATCAGGTATGTCCAGCAAGGGCTTCTGGAGAAAGCCGAGGCTCTGGTTCGAGA GTCGATGAAGAAAGGGATGGCTGTGACTCCAAACAGTTTGGCCATAGTTGCAAAGGGATACCTTGATAGAGGTGATGAGATGAGTAAAGCTTGTGAATTG ATGCAGGCTGCCCTTGTTCGGTACTTTGCGAACAAAGGATGGAAGCTGAATCCCAAGGCGATTACCGACATCCTGCATTGGCTTGGCGATGAAGGCACCG TCGAGGAAGCGAAAGCCTTCGTTGAGGTGTTGAAGACTATTGTTCCGACGAGCAGGGGAATGTATCATGCCATTTTGAAGGCTTGCAGAAGGAACGGTGT GGAAGTCGAGACAATCTTGCGAGCTATGGATGCGGATGGGATTGAACAAAATGAACGAACCCAGAAGATCCTTGGCAAGAAACTGGATTGA
AA sequence Show only first row Show all	>Lus10001213 pacid=23173048 polypeptide=Lus10001213 locus=Lus10001213.g ID=Lus10001213.BGIv1.0 annot-version=v1.0 MNSKLVFRALTQAQNSIISRSYHVAKGDRTTLYSKISPLGNPGNSVSAELDEWVKTGQKVRFTELQRIIQDLRKRRRFSQALEVSEWMSKSGTVVCSPAE HAIRIDLIGKVKGFECAEDYFNTLRDIDKTHKTYGALLNCYVRQKQMDKSISHIQKMKDLGFASSPIAYNDIMCLYTNLGQHEKVPSVLAEMKASNVSPD NYSYRICITSYGVRSEIEEMDKILHEMEQDSNIVMDWNTYTVVANFYIKAGLREKAVETLKKAEEVLEWKDGTGFNHLITLNAALGNVDEVLRLWKLEKA RCKRCINKDYIVVLESLMKLKEAGHAEKVLKEWESSGNCHDFSVPNVVVIRYVQQGLLEKAEALVRESMKKGMAVTPNSLAIVAKGYLDRGDEMSKACEL MQAALVRYFANKGWKLNPKAITDILHWLGDEGTVEEAKAFVEVLKTIVPTSRGMYHAILKACRRNGVEVETILRAMDADGIEQNERTQKILGKKLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	0	1
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	1.0	0.9084
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	2.2	0.8332
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	4.7	0.8552
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	4.9	0.8445
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	5.7	0.8333
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	6.8	0.7691
AT5G56310			Pentatricopeptide repeat (PPR)...		Lus10002024 [exp]	7.3	0.7759
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	8.4	0.8200
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	10.1	0.8303
AT1G54380			spliceosome protein-related (....		Lus10022813 [exp]	10.2	0.7700

Compare expression of checked genes

Lus10001213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.