Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33770 494 / 3e-165 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT2G16920 343 / 4e-106 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT1G53025 268 / 2e-82 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 257 / 1e-77 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 237 / 2e-73 Ubiquitin-conjugating enzyme family protein (.1) AT4G27960 67 / 9e-13 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 65 / 2e-12 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 65 / 3e-12 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 63 / 4e-12 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT3G08690 63 / 1e-11 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005854 [exp] 1024 / 0 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10034472 [exp] 355 / 1e-112 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10025070 [exp] 356 / 2e-111 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10028151 [exp] 260 / 2e-79 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10039831 [exp] 247 / 2e-75 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10018596 [exp] 239 / 2e-72 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10037778 [exp] 218 / 6e-66 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10042852 [exp] 219 / 9e-65 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10016921 [exp] 204 / 6e-61 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052600 [exp] 622 / 0 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 585 / 0 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.009G136000 [exp] 298 / 3e-89 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G176000 [exp] 291 / 2e-86 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.011G118800 [exp] 272 / 6e-83 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 268 / 2e-81 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 262 / 3e-80 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.010G146500 [exp] 249 / 2e-77 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 245 / 1e-75 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G108500 [exp] 119 / 9e-30 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10001214 pacid=23173056 polypeptide=Lus10001214 locus=Lus10001214.g ID=Lus10001214.BGIv1.0 annot-version=v1.0 ATGATTTGGTCATGTTACCGATGTTTCTACACGAAAGTTGGCAACTTGGAGACTGGTGATGGTACCATTTCCTCTGGCTTACGTGTACAATCACTACTCC CTGTAAATGTTGTTAATGCCCATGAGTTCTGGCCAGGGCAGTTTGTACTGGAAAAAAGTACGACTGATGACGATGATGGGCCTGGAAACCCGAAATGGGG GGTTGTGACTGCTGTGGATGCAAAAGAACACACGGTCAAGGTGAAATGGAACTCTATCTTGGAATCAACTGATCCGGAGAGGGTGGAAGAAACCGTGAGT GCATATGAACTAGTTGAGCATCCGGACTACTCCTACTGTTTTGGAGATATTGTCTTCAAAGGTCAGACTGGTGCTCCTAAAGACAAAGATCAGATCAGTT ATTGTTCGAAAGATTACATGTCTTGCATTGGATATGTTTCGGGATTCAAAGATGGTGCAGTTGAAGTGAGCTGGGCTTCCGGTCTTGCTACTAATGTTGC TCCCAATGAAATTTTCCGAGTTGAGAAACAAAACGGTTCATCTCCTACTCCCTTGCAAGAAGATGTCGAAGAGGAACTAAGCCAAGTGGCGGTTGATCGT GGCAAACAATTTGTTACACCGAGTTCAGATCTTTGGGAATGTAGCTCCTCTTTTGATCATCAGTCAACCTTTGGAATCTTGACAAGCATAGCCGCACGGG TACTCGGATCTTTCAGTTACTCATCATTGGCTAACCTTGGCTGTGTTCATGAAGATGAAGGTGAACTTGAACAATCCGAAACTTGTGGTATGTCCACAGA GATGAAACCTCTGGCGGCAGGTGAGATGGCAGTTGAGATGCAGAGATTTGATGAGGCTAGCTTAGAACAGGAAGTTGATGGTCTTGAGGAGAATAATAGA GGACTTAAAAGCTTGTCTGCAATTACACAGAGTGGGGAACTGTTTGCGAAATTCGATATTGTCAACGATTGTTCTGACCATCACTTTGTCGATGGAGCAG GCAAAGGATTGGCAATGTCTCAGGTCAAAAGAACTTGGTTGAAGAGGGTGCAGCAGGAATGGAGTAGCATAGCAGAAGATCTACCTGAATCGATCTATGT ACGCGTGTATGAGGAGAGAATCGATCTTCTTCGAGCAGCCATCATTGGAGCGCCTGGAACTCCATATCACAATGGCTTATTCTTCTTTGACATTCATCTC CCTCCTCAGTATCCTTATGAACCACCTGTAGTGCATTATCGATCTGGTGGGCTCCGGCTGAACCCGAATTTGTATGAATCAGGGAAGATCTGCCTCAGTC TCTTGAACACATGGACCGGCACCAGTACCGAAGTATGGAATCCAGAAAGCTCCAGCGTTCTTCAAGTCCTTCTCTCCCTCCAGGCTCTTGTCCTCAATGA AAAACCGTACTTCAACGAGGCTGGATATGATAATCAGGTTGGTAAAGCAGAGGGAGAGAAGAACTCGATAAGCTACAATGAAAACGCCTTCCTCGTTACC TGGAAGTCCATGCTTTACTTGCTCCGCAAGCCACCAAAGCATTTCGAGCCACTTGTCGAGCAACACATCAAGTTGCGTTCGAACGACATTCTTGCGGTCT GCAGGGCGTACATGGATGGAGCTCCAATCGCAAGAGATGGGGAAGAAACTTTGAAGGGGAGCTCTGATGGGTTCAAGATCATGCTTGCTAAGCTCTTGCC AAAACTCGCTGAAGCCTTTTTGAGGCCATAG
AA sequence Show only first row Show all	>Lus10001214 pacid=23173056 polypeptide=Lus10001214 locus=Lus10001214.g ID=Lus10001214.BGIv1.0 annot-version=v1.0 MIWSCYRCFYTKVGNLETGDGTISSGLRVQSLLPVNVVNAHEFWPGQFVLEKSTTDDDDGPGNPKWGVVTAVDAKEHTVKVKWNSILESTDPERVEETVS AYELVEHPDYSYCFGDIVFKGQTGAPKDKDQISYCSKDYMSCIGYVSGFKDGAVEVSWASGLATNVAPNEIFRVEKQNGSSPTPLQEDVEEELSQVAVDR GKQFVTPSSDLWECSSSFDHQSTFGILTSIAARVLGSFSYSSLANLGCVHEDEGELEQSETCGMSTEMKPLAAGEMAVEMQRFDEASLEQEVDGLEENNR GLKSLSAITQSGELFAKFDIVNDCSDHHFVDGAGKGLAMSQVKRTWLKRVQQEWSSIAEDLPESIYVRVYEERIDLLRAAIIGAPGTPYHNGLFFFDIHL PPQYPYEPPVVHYRSGGLRLNPNLYESGKICLSLLNTWTGTSTEVWNPESSSVLQVLLSLQALVLNEKPYFNEAGYDNQVGKAEGEKNSISYNENAFLVT WKSMLYLLRKPPKHFEPLVEQHIKLRSNDILAVCRAYMDGAPIARDGEETLKGSSDGFKIMLAKLLPKLAEAFLRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10001214 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	2.8	0.8963
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	5.7	0.8752
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	6.9	0.8434
					Lus10006216 [exp]	16.5	0.8351
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	16.7	0.8819
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	17.3	0.8605
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	30.8	0.8084
					Lus10022574 [exp]	33.5	0.7779
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002356 [exp]	34.8	0.8488
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004177 [exp]	35.0	0.8175

Compare expression of checked genes

Lus10001214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.