Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25480 169 / 4e-51 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G01050 81 / 5e-17 TROL thylakoid rhodanese-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005853 [exp] 393 / 1e-138 AT3G25480 219 / 1e-70 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10005947 [exp] 65 / 1e-11 AT4G01050 415 / 1e-141 thylakoid rhodanese-like (.1) Lus10029448 [exp] 64 / 2e-11 AT4G01050 404 / 2e-138 thylakoid rhodanese-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239800 [exp] 225 / 5e-72 AT3G25480 251 / 2e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.002G169100 [exp] 71 / 2e-13 AT4G01050 400 / 1e-136 thylakoid rhodanese-like (.1) Potri.014G096500 [exp] 67 / 3e-12 AT4G01050 388 / 5e-132 thylakoid rhodanese-like (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001215 pacid=23173054 polypeptide=Lus10001215 locus=Lus10001215.g ID=Lus10001215.BGIv1.0 annot-version=v1.0 ATGGTGGTCCTATCTATCCACATTCCTGATTCCTCCACCGTTGTTTCTTCCCCGTCGACCATGAAATTCCTAATTCTCTCTTCTTCTTCTCCTCCACCTC TTCCCCAAATCCACAACCCTAAACCACCGAATTCCCCCAAATCGCCACCGAATCATCTCAATCCTCTCTTCAGAAACTTGTCCCTTTCCATTTCCCTTTC ATCCATCCACCACTCATCTTCAATCCCTCCTTGTTTAGCTTCCGAGTCCCTAATCCCCTTGCCAGCTGAATACTCCGACAAAATAAACTTGGAAGCCATC CTCGTCTCAATCGACGACTTCTTCACCGCCAATCCCTTCTTCGTATCCGGATGCCTCTTCCTCTGGCTGGTCGTCATTCCGTTCGGCCAGCGTTATTTGA GGAGGTACATGTTTATCTCCGCAATCGACTCGTTCCGGAAGCTGAGAGATGATCCCAACGTGCAGCTTCTGGATATCAGAGATGAAGAGAACGTCGCTGG TCTTTGCTCTCCTAACTTGAACATGCTGGGTAAGCGGGTCGGGTGCGTTGAGTTTGATAAGGATGATGGAGATCGCTTTGTGAAGAATGTATTGAGTTTG TTTCCTGATCCTCAGAACACTGTCCTCTGCGCCCTGGCCAATGTTGATGATAATTCGTTGCAAGCATCAGAGTTATTAGTGAAGAATGGATTCAAAAGGG CCTATGCAGTGAAGGGTGGAGTCAGAGGCAAGAAAGGATGGGTGGCGATACAGAAAACAATGTTGCCACCTTCGGTCAGTATGCTGCGAAACAGGGCTAA AGTCTCGAAACCGGGAAGCAGAGGAGGGACTAGGGATGAAAACAACAATGAGAAGAGTGTTGATGCAGCAGCTTCTACTACGTCCACAAGTTAA
AA sequence Show only first row Show all	>Lus10001215 pacid=23173054 polypeptide=Lus10001215 locus=Lus10001215.g ID=Lus10001215.BGIv1.0 annot-version=v1.0 MVVLSIHIPDSSTVVSSPSTMKFLILSSSSPPPLPQIHNPKPPNSPKSPPNHLNPLFRNLSLSISLSSIHHSSSIPPCLASESLIPLPAEYSDKINLEAI LVSIDDFFTANPFFVSGCLFLWLVVIPFGQRYLRRYMFISAIDSFRKLRDDPNVQLLDIRDEENVAGLCSPNLNMLGKRVGCVEFDKDDGDRFVKNVLSL FPDPQNTVLCALANVDDNSLQASELLVKNGFKRAYAVKGGVRGKKGWVAIQKTMLPPSVSMLRNRAKVSKPGSRGGTRDENNNEKSVDAAASTTSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25480			Rhodanese/Cell cycle control p...		Lus10001215 [exp]	0	1
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10036913 [exp]	1.7	0.9301
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	2.6	0.9393
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	6.3	0.9301
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	10.4	0.9224
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	12.2	0.9193
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10020698 [exp]	14.2	0.9174
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	15.0	0.9148
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	16.7	0.9152
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10042048 [exp]	17.3	0.8722
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	18.3	0.9184

Compare expression of checked genes

Lus10001215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.