Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35630 2055 / 0 GEM1, MOR1 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1) AT3G28155 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038405 [exp] 2582 / 0 AT2G35630 2987 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G443200 [exp] 2254 / 0 AT2G35630 2869 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1) Potri.011G153700 [exp] 2243 / 0 AT2G35630 2928 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12348 [flax] [poplar] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Lus10001216 pacid=23148483 polypeptide=Lus10001216 locus=Lus10001216.g ID=Lus10001216.BGIv1.0 annot-version=v1.0 ATGTCCGAAGAAGAGAAATTGCTCAAGGACGCAAAGAAGTTGCCATGGGAAGATCGGCTGTTGCACAAGAACTGGAAAGTGCGGAATGAGGCCAACATCG ACTTGGCCGCCTTCTGCGATTCCGTTAGAGATCCCAAAGATGCCCGGTTGCGAGAATTCGGTCCGTTGTTTAGGAAAACCGTGGCTGATTCAAATGCTCC GGTTCAAGAGAAAGCACTGGATGCGTTGATAGCTTTTTTACGAGCTGCGGATGCTGACGCCGGAAGGTTTGCTAAGGAAGTATGTGATGCAATTTGTGCC AAGTGTCTTACTGGCCGGCCAAAGACAGTAGAGAAGGCACAGGCAGCATTCATGCTTTGGGTAGAGCTGGAGGCTGTTGAAGTATTTCTGGACGCAATGG AGAAGGCAATTAAGAACAAAGTTGCCAAAGCTGTTGTGCCAGCAATTGATGTCATGTTTCAAGCCTTAAGTGAATTTGGCTCTAAAGTTGTTCCACCAAA GCGGATTCTGAAGATGCTGCCAGAGTTATTTGATCATCAGGATCAAAATGTAAGGGCTTGCTCAAAAGGACTAACCCTGGAGCTTTGTCGGTGGATTGGC AAAGACCCTGTTAAATCAATATTGCTTGAGAAGATGCGGGATACAATGAAAAAAGAGCTGGAGGCTGAGCTTGTTAACGTTACGGGGACTGCTAAGCCAT CTCGCAAGATCAGATCTGAGCAAGACAAGGAACCAGAGCCTGAAACTGTAGCAGAAGCTGTGGGTCCTAGTCAATCTGAAGAAGCTGCAGATGATGTGCC TCAGGAAAGCGATGGGTATGAGTTTGTTGATCCTGTGGATATTTTGACTCCTCTGGAAAAGTCAGGCTTTTGGGATGGTGTGAAAGCTACCAAATGGTCA GAAAGAAAAGAAGGTGTTGCGGAGCTTACGAAGCTTGCTTCTACAAAGAGGATAGCTCCTGGTGATTTTTCTGAAGTTTGTCGTACATTAAAGAAGCTTA TCACTGATGTGAACATAGCAGTTGGAGTTGAGGCAGTCCAAGCCATCGGAAACCTGGCAAGCGGTCTTAGAACGCATTTCTCTGCAAGTTCTCGATTCCT GTTGCCCGTCTTACTTGAAAAATTGAAAGAGAAAAAACCTACAATGGCCGAGGCTCTCACACAAACCCTGCAAGCAATACATAAAGCAGGATGCTTAAAT CTTGTTGACATTATTGAAGAGATTAAGACGGCAACAAAGAATAAAGTCCCCTTAGTACGTTCATTAACCTTGAACTGGGTGACATTCTGTATTGAAACTA GCAACAAGGCTGTTGTTCTGAAGGCACATAAGGATTATGTGCCCATTTGTATGGAGTGTCTCAATGATGGCACTCCTGACGTTAGGGATTCAGCATTTGC AGCTTTGGCAGCAATAGCTAAGTCGGTTGGTATGAGGCCATTGGAGAGGTCACTGGAGAAACTTGATGATGTTAGGAAAAAGAAGCTGTCTGAAATGATT TCAGGTTCAAATGCTGGCGGCGCAACTGTTGCGGGCTCAACTGCACCTCAAGCTGCTGGCACCAGTGTATCTGTTGTTGAGACAGCTGGGGCTTCGCTTG CTAGGAAGTCAGCAGCAAGCATGCTTAGTGGGAGGAGGCCTGCCGCTGCAGCAGCAGCTGCACCGGCCAATAACAAAAAGCCTGGATCTACAAAAGCCGG GACCGGTAAGAAGGGTGAAGGCGCTGGACGTTCTGACAGTTCGAGAGCTGAGCCACCTGAGGATGTTGAACCTGCAGAAATGGGTCTTGAAGAGATAGAG AGTAGAATAAGTTCTCTTGTGCAAACTGATACTATTACTCTGTTGAAAAGCACTGTGTGGAAAGAGAGGCTTGAAGCAATGTCTTCTTTGAAGCAACAAA TAGAGGGAATACAAGATCTTGACAAGTCTGTGGAAATTTTGACACGCTTAGTGTGTGTTCTTCCTGGTTGGAGTGAAAAAAATGTTCAGGTCCAGCAGCA GGTGATTGAAGTTGTCACCCACCTAGCTTCAACTGCAACAAAATTCCCGAAGAAATGTGTTGTGCTATGCATACTGGGCATTGGTGAGCGGGTAGCTGAT ATTAAGACTAGAGCTCAAGCCATGAAGTGCCTCACCACTTTCTCAGAAGCTGTTGGTCCGGGATTTGTTTTTGAAAGACTTTACAAAATCATGAAAGAGC ACAAGAACCCTAAGGTTCTCAGTGAAGGAATATTGTGGATGGTGTCTGCAGTTGAGGACTTCGGTGTGGCACATGTAAAGCTTAAGGACTTGCTTGATTT CTGTAAAGATGTTGGGCTGCAGTCAAGTGTTGCAGCCAGCAGAAACGCTACAATTAAGCTTTTAGGTGTTGTACATAAGTTCGTTGGTCCAGATATCAAG GGTTTTCTGGCTGATGTCAAACCTGCATTGCTTAGTACACTTGATGCAGAATACGAAAAAAATCCTTTCGAGGGTGCTTCTGCAGCACCAAAAAGAACAG TCAAGGCATTGGAATCCGCAGCCTCTGCATCTGCTGGTGGTCTGGATGGCTTACCACGAGAAGACATTAGTGGAAAAATAACACCTACACTACTTAAGGG CTTTGAAAGTGCTGATTGGAAGATCCGATTAGAGTCTATTGAAGCTGTAAATAAGATTTTGGAAGAGGCTAATAAGCGCATCCAACCGACTGGAACAGGT GACCTGTTTGGTGCCCTTAGGGGGCGTTTATATGACAGCAATAAGAATTTGATCATGACAGCTTTGACAACACTTGGTAGTGTTGCATCAGCTATGGGTC CTGCTGTGGAGAAATCTAGCAAGGGAATTCTCTCCGATATTTTGAAATGCCTCAGTGATAATAAGAAACATATGAGAGAATGTACATTGAATACGCTGGA TTCCTGGGTTGCTACTGTTAATCTTGACAAAATGATTCCCTACATTACTACTGCTTTGATAGAAAATAAGCTTGGAGCTGATGGGCGTAAAGATCTCTTT GATTGGTGTTCAAAACAATTGTCTGGCTTGAGTGATTTTTCTGATGCTGTGCATCTGTTGAAACCAGTTGGTTCTGCAATGACGGACAAGTCTGCAGATG TTCGAAAAGCATCAGAAGCATGCATCGTTGAGGTTTTGAGAGTCTGTGGAACTGAGACCATTGAGAAGAATTTGAGGGACATTCAGGGGCCAGCATTAGC TCTTATTATGGAACGGATTAGACCTGAAGGTGCATTTCAAGAGTCATTTGACACTGCAAAAACAACCGCCACGGCTTCTAGGGCAAGCGCAAAGGTTGGA CGATCAGCAGTTAATGGCACCTCAAAGCATGGCAACAAAGCTGTTTCTTCCAGAATTGCACCACCTAAGGGCTCGAGGGTAGATCCAGTTTTGGCTGCTC ATGATAGGGCTGTCCAATCTCAAGCATTGTTGAATGTTAAGGACTCAAACAAGGATGAGCGAGAGAGAATTGTAGTCAGAAGGTTTAAGTTTGAAGATCT ACGGCTGGAGCAGATTCAAGATCTTGAGGCTGATATGATGAGATATTTCAGAGAGGACTTGCACAAGCGGCTCCTTAGTACAGATTTTAAGAAGCAGGTT GATGGACTTGATCTGCTACAGAAGGCACTTCCATCCATAACAAAAGATGTTATTGAAGTATTGGATATACTGTTGAAGTGGTTTGTGCTGCAGTTTTGCA AGTCTAACACAACATGCATGTTGAAGGTTCTTGAATTCCTACCTGAGCTTTTTGAGATGCTTCAAAACGAAGGATACAATTTAACTGAAGCCGAGGCATC AATATTTCTTCCCTGCTTGTCAGAAAAGTTGGGCCATAATATTGAGAAAGTCAGAGAAAAGATGCGTGAACTTACCAAGCAAATTATTCAAGCATATTCC GTGGCAAAAACTTTTCCATATATTTTAGAGGGTCTGCGCTCAAAAAATAACCGTACTCGGATAGAATGTGCTGACCTGGTTGGGTTCTTAATTGAGCATC ATGGATCTGAGATTGGTGGACAGCTAAAATCCCTCCAAGTTGTTGCAAGCTTGACAGCTGAGCGGGACGGCGAAACTCGAAAAGCTGCTCTGAATGCACT AGCTACTGGATACAAGTTCCTTGGTGAGGACATATGGAGATATGTAGGCAAGCTAACAGATGCTCAAAAGAGTATGCTGGATGATAGGTTTAAGTGGAAG GTTCGTGAGATGGAAAAACGGAGGGAAGGGCGTCCAGGCGATGCTAGGGCTGCTTTGAGAAGATCTGTTCGGGAAAATGGGTATGCATCTGAAGATTGA
AA sequence Show only first row Show all	>Lus10001216 pacid=23148483 polypeptide=Lus10001216 locus=Lus10001216.g ID=Lus10001216.BGIv1.0 annot-version=v1.0 MSEEEKLLKDAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSVRDPKDARLREFGPLFRKTVADSNAPVQEKALDALIAFLRAADADAGRFAKEVCDAICA KCLTGRPKTVEKAQAAFMLWVELEAVEVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGSKVVPPKRILKMLPELFDHQDQNVRACSKGLTLELCRWIG KDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSEQDKEPEPETVAEAVGPSQSEEAADDVPQESDGYEFVDPVDILTPLEKSGFWDGVKATKWS ERKEGVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVGVEAVQAIGNLASGLRTHFSASSRFLLPVLLEKLKEKKPTMAEALTQTLQAIHKAGCLN LVDIIEEIKTATKNKVPLVRSLTLNWVTFCIETSNKAVVLKAHKDYVPICMECLNDGTPDVRDSAFAALAAIAKSVGMRPLERSLEKLDDVRKKKLSEMI SGSNAGGATVAGSTAPQAAGTSVSVVETAGASLARKSAASMLSGRRPAAAAAAAPANNKKPGSTKAGTGKKGEGAGRSDSSRAEPPEDVEPAEMGLEEIE SRISSLVQTDTITLLKSTVWKERLEAMSSLKQQIEGIQDLDKSVEILTRLVCVLPGWSEKNVQVQQQVIEVVTHLASTATKFPKKCVVLCILGIGERVAD IKTRAQAMKCLTTFSEAVGPGFVFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVAHVKLKDLLDFCKDVGLQSSVAASRNATIKLLGVVHKFVGPDIK GFLADVKPALLSTLDAEYEKNPFEGASAAPKRTVKALESAASASAGGLDGLPREDISGKITPTLLKGFESADWKIRLESIEAVNKILEEANKRIQPTGTG DLFGALRGRLYDSNKNLIMTALTTLGSVASAMGPAVEKSSKGILSDILKCLSDNKKHMRECTLNTLDSWVATVNLDKMIPYITTALIENKLGADGRKDLF DWCSKQLSGLSDFSDAVHLLKPVGSAMTDKSADVRKASEACIVEVLRVCGTETIEKNLRDIQGPALALIMERIRPEGAFQESFDTAKTTATASRASAKVG RSAVNGTSKHGNKAVSSRIAPPKGSRVDPVLAAHDRAVQSQALLNVKDSNKDERERIVVRRFKFEDLRLEQIQDLEADMMRYFREDLHKRLLSTDFKKQV DGLDLLQKALPSITKDVIEVLDILLKWFVLQFCKSNTTCMLKVLEFLPELFEMLQNEGYNLTEAEASIFLPCLSEKLGHNIEKVREKMRELTKQIIQAYS VAKTFPYILEGLRSKNNRTRIECADLVGFLIEHHGSEIGGQLKSLQVVASLTAERDGETRKAALNALATGYKFLGEDIWRYVGKLTDAQKSMLDDRFKWK VREMEKRREGRPGDARAALRRSVRENGYASED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	0	1
AT4G39420			unknown protein		Lus10006814 [exp]	1.7	0.9790
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	3.5	0.9778
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036171 [exp]	3.7	0.9610
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10034360 [exp]	4.2	0.9767
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	4.6	0.9671
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018743 [exp]	6.0	0.9686
AT3G50370			unknown protein		Lus10009355 [exp]	6.0	0.9626
AT2G21390			Coatomer, alpha subunit (.1)		Lus10035884 [exp]	6.3	0.9657
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	6.3	0.9681
AT2G45540			WD-40 repeat family protein / ...		Lus10009307 [exp]	6.5	0.9678

Compare expression of checked genes

Lus10001216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.