Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44600 196 / 4e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G44590 177 / 6e-53 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G63100 82 / 1e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038404 [exp] 442 / 2e-156 AT5G44600 301 / 7e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015621 [exp] 117 / 3e-30 AT5G63100 333 / 3e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037637 [exp] 110 / 2e-28 AT5G63100 323 / 7e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073000 [exp] 232 / 4e-74 AT5G44600 331 / 1e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G082432 [exp] 102 / 2e-24 AT5G63100 360 / 8e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001217 pacid=23148489 polypeptide=Lus10001217 locus=Lus10001217.g ID=Lus10001217.BGIv1.0 annot-version=v1.0 ATGCATTCGTCACCATTTCTGAATTCCGTTGCTTCGTCCTTCGCAATCAATCCTTGCTCGGAGGAATTCCGCCGGTGCTTCTTCACTAATGGCTTTCCTT CCTCTCTCCGGAGAAAGACCATAGCTTTTGCGCCGCCACCGTTAACTCGTCGGCGCAATTTCCGTGCCTCCACTCAGGACGGAAGCAATGTAGTTAGCGG AGAAGGGACAAGTAGAAGGACGGAGAGAAGGAGAAGAAGATTTGCAGTTGATAGTGTGCATAGCATTCTTCAAAAGGACCAGAAATGGACCGACTCATAC TGGGACGAGTTTGCAAGCTTGCCTCCTATAGTCCCAGAAGGTCCTATTTCCATACTAGGCCTGGTATTCAATCTCACTAACCTGCGCCTGGTATTCAAAC TCGAAACTAATCGGCAGGGTGGTGGTACCGCTGCACATTTGATGCTTGACTTGTTGCCTTCGTTGCAACTTGAAGGATGGGAAATTGATGAGATTCTAAT TGATAAAGCAAGGATTTACTTTGGGCTATCTGAATTGGAGAAGAAGACTCCAGCTGGTGGTTGTCTTCATGTTTGCATTGGGGATGCTCTTCAATCTACT GACAATGATCATGGAAAATATGCTGGCATTATTGTCAACTTGTTCAACGAGGGGAAGGTGCTGCCAGAATTGGAACAAGTGTCCACTTGGTTGGAAATGA AGAGGAGACTGATGCTTAATGGTCGGGTTATGGTGAACTGTGCTGGAATTCATAGGAGTGGGACATCAGACATGGTAGATAGAAGGAATCATCCTGAAGG GAAATGGGGTGAACATGCTGTCATCAAAGCCATGCATGAAGCATTTCCTGGGGAATTTGGGCATGCAATGGGTAGGAGGTTTATGACTGATGTGTTAGCT GTGTTTGGTTCGTTTGTTATTGGATTGCTTTGTTACAAAGTGTTTACAGGTGGATGGTACGAAAAAAATGAAGATGGGAATTGA
AA sequence Show only first row Show all	>Lus10001217 pacid=23148489 polypeptide=Lus10001217 locus=Lus10001217.g ID=Lus10001217.BGIv1.0 annot-version=v1.0 MHSSPFLNSVASSFAINPCSEEFRRCFFTNGFPSSLRRKTIAFAPPPLTRRRNFRASTQDGSNVVSGEGTSRRTERRRRRFAVDSVHSILQKDQKWTDSY WDEFASLPPIVPEGPISILGLVFNLTNLRLVFKLETNRQGGGTAAHLMLDLLPSLQLEGWEIDEILIDKARIYFGLSELEKKTPAGGCLHVCIGDALQST DNDHGKYAGIIVNLFNEGKVLPELEQVSTWLEMKRRLMLNGRVMVNCAGIHRSGTSDMVDRRNHPEGKWGEHAVIKAMHEAFPGEFGHAMGRRFMTDVLA VFGSFVIGLLCYKVFTGGWYEKNEDGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	0	1
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10027068 [exp]	1.4	0.9495
AT5G48830			unknown protein		Lus10038165 [exp]	3.0	0.9481
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	4.9	0.9532
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	6.0	0.9223
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039687 [exp]	8.7	0.9219
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	8.9	0.9209
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10024735 [exp]	9.0	0.9027
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	9.8	0.9185
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10032165 [exp]	11.0	0.9242
AT1G56050			GTP-binding protein-related (....		Lus10031209 [exp]	12.2	0.9046

Compare expression of checked genes

Lus10001217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.